PEF1

General Information

Gene Name : PEF1
Gene ID : ENSG00000162517.12
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: PEF1)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	PEF1	ENSG00000162517.12	31.77	54.75	43.26	ENCSR000AEF
HepG2	PEF1	ENSG00000162517.12	46.36	42.18	44.27	ENCSR985KAT
K562	PEF1	ENSG00000162517.12	70.66	64.24	67.45	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for PEF1 is not avaliable on ENCORE database.

Proteins bound to RNA

PEF1 RNA is bound by 7 proteins.

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eCLIP assay for PEF1 is not avaliable on ENCORE database.

7 proteins are bound to PEF1 RNA:

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Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr1	32095595	32095661	-	3'-UTR,intron-Distal	4.35109	15.61943	K562	UPF1
chr1	32095925	32095982	-	3'-UTR,intron-Distal,intron-Proximal	5.89647	13.76890	K562	UPF1
chr1	32095982	32096069	-	3'-UTR,intron-Distal,intron-Proximal	4.25670	11.39836	K562	UPF1
chr1	32095728	32095791	-	3'-UTR,intron-Distal	5.64669	9.47550	K562	UPF1
chr1	32095771	32095863	-	3'-UTR,intron-Distal,intron-Proximal	3.10733	8.66768	K562	YBX3
chr1	32095652	32095716	-	3'-UTR,intron-Distal	5.07977	8.19969	HepG2	UPF1
chr1	32095800	32095857	-	3'-UTR,intron-Distal,intron-Proximal	3.69885	6.98582	K562	UPF1
chr1	32098050	32098088	-	intron-Distal,intron-Proximal	5.20859	6.44303	K562	AQR
chr1	32095584	32095652	-	3'-UTR,intron-Distal	4.78972	5.94150	HepG2	UPF1
chr1	32095601	32095708	-	3'-UTR,intron-Distal	4.86975	5.71320	HepG2	AKAP1
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 20 entries

eCLIP assay for PEF1 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for PEF1 is not available on ENCORE database.
73 RBPs can affect the levels of PEF1.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for PEF1 is not available on ENCORE database.

73 RBPs can affect the gene expression of PEF1 :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
PEF1	ENSG00000162517.8	778.73780	1362.24900	-0.80680	18.71250	17.38210	HepG2	ETF1
PEF1	ENSG00000162517.8	379.78320	1017.76500	-1.42220	15.53000	14.36350	HepG2	TAF15
PEF1	ENSG00000162517.8	797.48820	1285.98170	-0.68930	14.36780	13.46340	HepG2	SRFBP1
PEF1	ENSG00000162517.8	523.10880	977.50140	-0.90200	14.21410	12.76930	HepG2	PUM2
PEF1	ENSG00000162517.8	514.46730	920.13400	-0.83880	12.49430	10.84890	K562	POLR2G
PEF1	ENSG00000162517.8	1480.50110	962.97970	0.62040	11.78240	10.70520	K562	AGGF1
PEF1	ENSG00000162517.8	637.55720	1199.56180	-0.91190	11.21080	9.54440	K562	PCBP3
PEF1	ENSG00000162517.8	877.55790	554.27620	0.66280	10.06710	9.03800	HepG2	UTP3
PEF1	ENSG00000162517.8	456.16340	921.30580	-1.01410	9.49250	8.57690	HepG2	SRSF9
PEF1	ENSG00000162517.8	561.95190	1031.72400	-0.87650	9.64300	8.43850	HepG2	G3BP1
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 81 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for PEF1 is not available on ENCORE database.

5 RBPs can affect the splicing of PEF1 :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
SE	PEF1	ENSG00000162517.8	chr1	-	32100822	32101123	32098840	32098915	32110441	32110474	-0.31200	0.00000	0.00012	excluded	K562	SRSF1
SE	PEF1	ENSG00000162517.8	chr1	-	32100822	32101123	32098840	32098915	32110441	32110474	-0.53600	0.00000	0.00000	excluded	HepG2	U2AF1
SE	PEF1	ENSG00000162517.8	chr1	-	32100822	32101123	32098840	32098915	32110441	32110474	-0.68300	0.00000	0.00000	excluded	K562	U2AF1
SE	PEF1	ENSG00000162517.8	chr1	-	32100822	32101123	32098697	32098915	32110441	32110474	-0.31200	0.00000	0.00000	excluded	HepG2	SRSF1
A3SS	PEF1	ENSG00000162517.8	chr1	-	32098095	32098280	32098095	32098239	32098759	32098915	0.15700	0.00000	0.00000	longer	K562	AQR
A3SS	PEF1	ENSG00000162517.8	chr1	-	32096389	32096591	32096389	32096443	32098095	32098239	0.07100	0.00000	0.00000	longer	K562	AQR
SE	PEF1	ENSG00000162517.8	chr1	-	32100822	32101123	32098840	32098915	32110441	32110474	-0.41600	0.00001	0.00051	excluded	K562	U2AF2
SE	PEF1	ENSG00000162517.8	chr1	-	32100822	32101123	32098840	32098915	32110441	32110474	-0.32400	0.00006	0.00199	excluded	K562	SF3B4

Showing 1 to 8 of 8 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

PEF1

General Information

Functions

Localization

Domains (AlphaFold: PEF1)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for PEF1 is not avaliable on ENCORE database.

7 proteins are bound to PEF1 RNA:

eCLIP assay for PEF1 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for PEF1 is not available on ENCORE database.

73 RBPs can affect the gene expression of PEF1 :

The Knockdown/knockout RNA-Seq assay for PEF1 is not available on ENCORE database.

5 RBPs can affect the splicing of PEF1 :

The Knockdown/knockout RNA-Seq assay for PEF1 is not avaliable on ENCORE database.