PAFAH1B3

General Information

Gene Name : PAFAH1B3
Gene ID : ENSG00000079462.7
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: PAFAH1B3)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	PAFAH1B3	ENSG00000079462.7	9.60	31.74	20.67	ENCSR000AEF
HepG2	PAFAH1B3	ENSG00000079462.7	57.18	28.57	42.88	ENCSR985KAT
K562	PAFAH1B3	ENSG00000079462.7	81.57	65.02	73.29	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for PAFAH1B3 is not avaliable on ENCORE database.

Proteins bound to RNA

PAFAH1B3 RNA is bound by 3 proteins.

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eCLIP assay for PAFAH1B3 is not avaliable on ENCORE database.

3 proteins are bound to PAFAH1B3 RNA:

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Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr19	42806659	42806757	-	5'-UTR,intron-Distal,intron-Proximal	4.39954	11.42614	K562	DDX3X
chr19	42806571	42806659	-	5'-UTR,intron-Distal,intron-Proximal	3.89031	7.11978	K562	DDX3X
chr19	42801228	42801348	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.73904	5.19325	HepG2	LARP4
chr19	42804362	42804394	-	CDS,intron-Distal,intron-Proximal	3.91858	3.25175	K562	YBX3
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 4 of 4 entries

eCLIP assay for PAFAH1B3 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for PAFAH1B3 is not available on ENCORE database.
73 RBPs can affect the levels of PAFAH1B3.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for PAFAH1B3 is not available on ENCORE database.

73 RBPs can affect the gene expression of PAFAH1B3 :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
PAFAH1B3	ENSG00000079462.3	18.23870	117.60970	-2.68890	13.79610	11.95790	K562	G3BP2
PAFAH1B3	ENSG00000079462.3	905.59340	1442.38700	-0.67150	11.37040	9.12310	K562	PUM1
PAFAH1B3	ENSG00000079462.3	332.23070	158.30030	1.06940	9.98120	8.46500	K562	EIF3G
PAFAH1B3	ENSG00000079462.3	589.77250	1023.21070	-0.79490	9.32420	8.34910	K562	AQR
PAFAH1B3	ENSG00000079462.3	810.25320	524.68940	0.62680	8.58190	7.65550	K562	AGGF1
PAFAH1B3	ENSG00000079462.3	583.40580	349.04520	0.74100	8.21340	7.37060	HepG2	NELFE
PAFAH1B3	ENSG00000079462.3	486.07700	303.43570	0.67970	7.52120	6.57740	HepG2	SUCLG1
PAFAH1B3	ENSG00000079462.3	417.96310	260.02900	0.68460	6.95750	5.93310	HepG2	HNRNPL
PAFAH1B3	ENSG00000079462.3	293.78680	164.89920	0.83310	6.86680	5.92320	HepG2	SMN1
PAFAH1B3	ENSG00000079462.3	853.78360	545.96850	0.64500	6.26830	5.25680	K562	AKAP8L
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 82 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for PAFAH1B3 is not available on ENCORE database.

1 RBPs can affect the splicing of PAFAH1B3 :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	2ndExonStart	2ndExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP	Bound by RBP
SE	PAFAH1B3	ENSG00000079462.3	chr19	-	42806588	42806647			42806383	42806477	42806850	42806922	-0.48000	0.00001	0.00786	excluded	K562	PUM1

Showing 1 to 1 of 1 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

PAFAH1B3

General Information

Functions

Localization

Domains (AlphaFold: PAFAH1B3)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for PAFAH1B3 is not avaliable on ENCORE database.

3 proteins are bound to PAFAH1B3 RNA:

eCLIP assay for PAFAH1B3 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for PAFAH1B3 is not available on ENCORE database.

73 RBPs can affect the gene expression of PAFAH1B3 :

The Knockdown/knockout RNA-Seq assay for PAFAH1B3 is not available on ENCORE database.

1 RBPs can affect the splicing of PAFAH1B3 :

The Knockdown/knockout RNA-Seq assay for PAFAH1B3 is not avaliable on ENCORE database.