GNPDA2

General Information

Gene Name : GNPDA2
Gene ID : ENSG00000163281.11
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: GNPDA2)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	GNPDA2	ENSG00000163281.11	17.23	15.75	16.49	ENCSR000AEF
HepG2	GNPDA2	ENSG00000163281.11	3.92	7.90	5.91	ENCSR985KAT
K562	GNPDA2	ENSG00000163281.11	8.38	7.89	8.13	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for GNPDA2 is not avaliable on ENCORE database.

Proteins bound to RNA

GNPDA2 RNA is bound by 1 proteins.

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eCLIP assay for GNPDA2 is not avaliable on ENCORE database.

1 proteins are bound to GNPDA2 RNA:

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Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr4	44709707	44709783	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.38443	3.76553	K562	PRPF8
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 1 of 1 entries

eCLIP assay for GNPDA2 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for GNPDA2 is not available on ENCORE database.
43 RBPs can affect the levels of GNPDA2.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for GNPDA2 is not available on ENCORE database.

43 RBPs can affect the gene expression of GNPDA2 :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
GNPDA2	ENSG00000163281.7	1223.87340	545.64720	1.16530	19.13700	17.73960	K562	PUS1
GNPDA2	ENSG00000163281.7	881.59730	531.67790	0.72950	10.45810	9.33010	K562	RBM15
GNPDA2	ENSG00000163281.7	460.36390	177.06770	1.37840	9.42070	8.17370	HepG2	RAVER1
GNPDA2	ENSG00000163281.7	930.14930	550.23250	0.75730	9.40950	8.12230	K562	AKAP8L
GNPDA2	ENSG00000163281.7	812.69560	528.78810	0.61990	8.41570	7.49960	K562	AGGF1
GNPDA2	ENSG00000163281.7	349.25910	159.39920	1.13160	8.15670	7.07940	HepG2	U2AF1
GNPDA2	ENSG00000163281.7	750.56980	424.16600	0.82330	7.73110	5.74630	K562	U2AF1
GNPDA2	ENSG00000163281.7	411.17250	256.36220	0.68150	5.90910	5.25330	HepG2	SRFBP1
GNPDA2	ENSG00000163281.7	124.21660	258.04980	-1.05480	6.01520	5.09730	HepG2	GPKOW
GNPDA2	ENSG00000163281.7	655.33550	438.05880	0.58100	5.73730	4.58110	K562	U2AF2
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 46 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for GNPDA2 is not available on ENCORE database.

6 RBPs can affect the splicing of GNPDA2 :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	2ndExonStart	2ndExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
SE	GNPDA2	ENSG00000163281.7	chr4	-	44724100	44724259			44720325	44720427	44728490	44728587	-0.38400	0.00017	0.04317	excluded	K562	SAFB
SE	GNPDA2	ENSG00000163281.7	chr4	-	44716612	44716676			44712969	44713154	44719129	44719312	0.28100	0.00051	0.05921	included	HepG2	SSB
SE	GNPDA2	ENSG00000163281.7	chr4	-	44724100	44724259			44712969	44713154	44728490	44728587	-0.34800	0.00111	0.02936	excluded	HepG2	HNRNPK
MXE	GNPDA2	ENSG00000163281.7	chr4	-	44720325	44720427	44724100	44724283	44719129	44719312	44728490	44728540	0.15000	0.00177	0.01499	1included	K562	AQR
SE	GNPDA2	ENSG00000163281.7	chr4	-	44724100	44724259			44712969	44713154	44728490	44728587	-0.28500	0.00189	0.09213	excluded	HepG2	AKAP1
MXE	GNPDA2	ENSG00000163281.7	chr4	-	44719129	44719312	44724100	44724283	44712969	44713154	44728490	44728540	0.16300	0.00202	0.01676	1included	K562	AQR
MXE	GNPDA2	ENSG00000163281.7	chr4	-	44719129	44719312	44724100	44724259	44712969	44713154	44728490	44728587	-0.24700	0.00230	0.05011	2included	HepG2	HNRNPK
SE	GNPDA2	ENSG00000163281.7	chr4	-	44719129	44719312			44712969	44713154	44724100	44724259	0.28400	0.00365	0.09957	included	K562	HNRNPU

Showing 1 to 8 of 8 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

GNPDA2

General Information

Functions

Localization

Domains (AlphaFold: GNPDA2)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for GNPDA2 is not avaliable on ENCORE database.

1 proteins are bound to GNPDA2 RNA:

eCLIP assay for GNPDA2 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for GNPDA2 is not available on ENCORE database.

43 RBPs can affect the gene expression of GNPDA2 :

The Knockdown/knockout RNA-Seq assay for GNPDA2 is not available on ENCORE database.

6 RBPs can affect the splicing of GNPDA2 :

The Knockdown/knockout RNA-Seq assay for GNPDA2 is not avaliable on ENCORE database.