CNPPD1

General Information

Gene Name : CNPPD1
Gene ID : ENSG00000115649.15
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: CNPPD1)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	CNPPD1	ENSG00000115649.15	10.82	21.73	16.27	ENCSR000AEF
HepG2	CNPPD1	ENSG00000115649.15	28.42	18.58	23.50	ENCSR985KAT
K562	CNPPD1	ENSG00000115649.15	27.45	20.46	23.95	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for CNPPD1 is not avaliable on ENCORE database.

Proteins bound to RNA

CNPPD1 RNA is bound by 12 proteins.

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eCLIP assay for CNPPD1 is not avaliable on ENCORE database.

12 proteins are bound to CNPPD1 RNA:

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Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr2	220036643	220036813	-	3'-UTR,intron-Distal,intron-Proximal	4.44312	28.50018	K562	UPF1
chr2	220036949	220037003	-	3'-UTR,intron-Distal	4.89261	25.91418	K562	UPF1
chr2	220037070	220037171	-	3'-UTR,intron-Distal	5.44905	20.44698	K562	UPF1
chr2	220036863	220036949	-	3'-UTR,intron-Distal,intron-Proximal	5.52136	18.93168	K562	UPF1
chr2	220037034	220037219	-	3'-UTR,intron-Distal	4.62269	17.23165	HepG2	AKAP1
chr2	220037161	220037259	-	3'-UTR,intron-Distal	5.11775	17.14784	HepG2	UPF1
chr2	220036667	220036778	-	3'-UTR,intron-Distal	5.04865	16.56087	HepG2	UPF1
chr2	220037060	220037161	-	3'-UTR,intron-Distal	4.20456	16.19422	HepG2	UPF1
chr2	220038014	220038114	-	CDS,intron-Distal,intron-Proximal	6.06925	15.26202	HepG2	PRPF8
chr2	220036659	220036780	-	3'-UTR,intron-Distal	4.27667	13.79162	HepG2	AKAP1
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 34 entries

eCLIP assay for CNPPD1 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for CNPPD1 is not available on ENCORE database.
57 RBPs can affect the levels of CNPPD1.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for CNPPD1 is not available on ENCORE database.

57 RBPs can affect the gene expression of CNPPD1 :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
CNPPD1	ENSG00000115649.11	1020.13500	598.79050	0.76850	11.73670	10.83320	HepG2	TIAL1
CNPPD1	ENSG00000115649.11	1689.08360	896.96810	0.91300	10.72470	9.70090	K562	AGGF1
CNPPD1	ENSG00000115649.11	742.96890	1197.91600	-0.68920	10.66170	9.55130	HepG2	QKI
CNPPD1	ENSG00000115649.11	2075.32740	1478.02860	0.48960	10.32830	9.52720	HepG2	SRFBP1
CNPPD1	ENSG00000115649.11	152.03310	344.93280	-1.18190	8.73010	7.32930	K562	G3BP2
CNPPD1	ENSG00000115649.11	187.53750	345.20570	-0.88030	7.60380	6.26850	K562	U2AF2
CNPPD1	ENSG00000115649.11	1012.73010	677.03940	0.58080	6.20450	5.34620	K562	HNRNPC
CNPPD1	ENSG00000115649.11	897.79970	1201.98830	-0.42100	5.52940	4.91880	HepG2	SRSF1
CNPPD1	ENSG00000115649.11	933.62000	668.45150	0.48190	5.69520	4.87250	K562	FXR1
CNPPD1	ENSG00000115649.11	906.09390	657.58730	0.46240	5.61650	4.81210	HepG2	UTP3
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 61 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for CNPPD1 is not available on ENCORE database.

5 RBPs can affect the splicing of CNPPD1 :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
RI	CNPPD1	ENSG00000115649.11	chr2	-	220039499	220039830	220039499	220039628	220039709	220039830	0.19000	0.00000	0.00002	included	K562	PUS1
A3SS	CNPPD1	ENSG00000115649.11	chr2	-	220039709	220039850	220039709	220039830	220040312	220040394	0.05500	0.00001	0.00006	longer	K562	AQR
RI	CNPPD1	ENSG00000115649.11	chr2	-	220039499	220039830	220039499	220039628	220039709	220039830	0.15000	0.00003	0.00059	included	K562	RBM15
RI	CNPPD1	ENSG00000115649.11	chr2	-	220039499	220039830	220039499	220039628	220039709	220039830	0.17200	0.00053	0.00525	included	HepG2	U2AF2
SE	CNPPD1	ENSG00000115649.11	chr2	-	220038867	220038929	220038071	220038189	220039499	220039628	-0.05400	0.00066	0.00856	excluded	K562	AQR
RI	CNPPD1	ENSG00000115649.11	chr2	-	220039499	220039830	220039499	220039628	220039709	220039830	0.06700	0.00423	0.06465	included	K562	U2AF1

Showing 1 to 6 of 6 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

CNPPD1

General Information

Functions

Localization

Domains (AlphaFold: CNPPD1)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for CNPPD1 is not avaliable on ENCORE database.

12 proteins are bound to CNPPD1 RNA:

eCLIP assay for CNPPD1 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for CNPPD1 is not available on ENCORE database.

57 RBPs can affect the gene expression of CNPPD1 :

The Knockdown/knockout RNA-Seq assay for CNPPD1 is not available on ENCORE database.

5 RBPs can affect the splicing of CNPPD1 :

The Knockdown/knockout RNA-Seq assay for CNPPD1 is not avaliable on ENCORE database.