ARHGEF28

General Information

Gene Name : ARHGEF28
Gene ID : ENSG00000214944.9
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: ARHGEF28)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	ARHGEF28	ENSG00000214944.9	0.34	0.07	0.21	ENCSR000AEF
HepG2	ARHGEF28	ENSG00000214944.9	11.81	15.39	13.60	ENCSR985KAT
K562	ARHGEF28	ENSG00000214944.9	0.01	0.02	0.01	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for ARHGEF28 is not avaliable on ENCORE database.

Proteins bound to RNA

ARHGEF28 RNA is bound by 29 proteins.

CanvasJS.com

eCLIP assay for ARHGEF28 is not avaliable on ENCORE database.

29 proteins are bound to ARHGEF28 RNA:

Show entries

Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr5	73188228	73188322	+	intron-Distal	6.32046	87.31023	HepG2	RBFOX2
chr5	73188147	73188206	+	intron-Distal,intron-Proximal	5.37385	37.76629	HepG2	RBFOX2
chr5	73189101	73189125	+	CDS,intron-Proximal	6.32776	31.71283	HepG2	PRPF8
chr5	73189125	73189176	+	intron-Proximal	6.33173	31.71283	HepG2	PRPF8
chr5	73188206	73188228	+	intron-Distal	5.14306	28.88276	HepG2	RBFOX2
chr5	73178294	73178426	+	CDS,intron-Proximal	4.60515	22.74466	HepG2	BCLAF1
chr5	73159522	73159699	+	intron-Distal	3.73406	16.84239	HepG2	SUGP2
chr5	73156191	73156326	+	intron-Distal	4.19624	15.96664	HepG2	SUGP2
chr5	73193890	73193988	+	CDS,intron-Distal,intron-Proximal	4.58628	15.51998	HepG2	PRPF8
chr5	73155564	73155681	+	intron-Distal	4.19377	15.46749	HepG2	SUGP2
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 160 entries

eCLIP assay for ARHGEF28 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for ARHGEF28 is not available on ENCORE database.
89 RBPs can affect the levels of ARHGEF28.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for ARHGEF28 is not available on ENCORE database.

89 RBPs can affect the gene expression of ARHGEF28 :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
ARHGEF28	ENSG00000214944.5	4661.87130	2241.09410	1.05660	61.58990	60.02390	HepG2	SRFBP1
ARHGEF28	ENSG00000214944.5	3019.44530	1352.70590	1.15830	58.69590	56.82580	HepG2	SRSF9
ARHGEF28	ENSG00000214944.5	3595.16310	2067.72240	0.79790	29.07120	27.27390	HepG2	AUH
ARHGEF28	ENSG00000214944.5	865.60730	1818.50670	-1.07100	23.07790	21.58010	HepG2	PUF60
ARHGEF28	ENSG00000214944.5	2947.70830	1786.72880	0.72220	20.23480	18.82180	HepG2	CELF1
ARHGEF28	ENSG00000214944.5	4479.25320	1604.04760	1.48140	20.25460	18.24800	HepG2	CNOT7
ARHGEF28	ENSG00000214944.5	476.28450	1108.64980	-1.21890	17.85970	16.07160	HepG2	XRN2
ARHGEF28	ENSG00000214944.5	2722.92450	1657.06950	0.71640	16.14600	14.81400	HepG2	QKI
ARHGEF28	ENSG00000214944.5	2404.62240	1684.06640	0.51380	14.61450	13.60220	HepG2	ZNF622
ARHGEF28	ENSG00000214944.5	2324.49830	1530.03870	0.60330	14.42430	13.36650	HepG2	PTBP1
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 90 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for ARHGEF28 is not available on ENCORE database.

4 RBPs can affect the splicing of ARHGEF28 :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
SE	ARHGEF28	ENSG00000214944.5	chr5	+	73218911	73218989	73207099	73207400	73236668	73237817	-0.11000	0.00001	0.00019	excluded	HepG2	U2AF2
SE	ARHGEF28	ENSG00000214944.5	chr5	+	73193786	73193918	73190267	73190400	73197008	73197109	-0.10300	0.00010	0.00275	excluded	HepG2	U2AF1
SE	ARHGEF28	ENSG00000214944.5	chr5	+	73128162	73128284	73109342	73109498	73136304	73136585	-0.34700	0.00031	0.01554	excluded	HepG2	HNRNPC
SE	ARHGEF28	ENSG00000214944.5	chr5	+	73218911	73218989	73207099	73207400	73236668	73237817	-0.12900	0.00096	0.05489	excluded	HepG2	NCBP2

Showing 1 to 4 of 4 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

ARHGEF28

General Information

Functions

Localization

Domains (AlphaFold: ARHGEF28)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for ARHGEF28 is not avaliable on ENCORE database.

29 proteins are bound to ARHGEF28 RNA:

eCLIP assay for ARHGEF28 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for ARHGEF28 is not available on ENCORE database.

89 RBPs can affect the gene expression of ARHGEF28 :

The Knockdown/knockout RNA-Seq assay for ARHGEF28 is not available on ENCORE database.

4 RBPs can affect the splicing of ARHGEF28 :

The Knockdown/knockout RNA-Seq assay for ARHGEF28 is not avaliable on ENCORE database.