NT-BGHLV12-01_ATCACG_L001_R1_001.fastq.gz | ENCODE_DATA/set12/fastq | fastq | reads | knockdown followed by RNA-seq | Graveley Lab | 732 | HiSeq2000 | 100 | paired-ended | 1 | | | | | ENCODE3 | | 12789 |
NT-BGHLV12-93_GTGGCC_L007_R1_001.fastq.gz | ENCODE_DATA/set12/fastq | fastq | reads | knockdown followed by RNA-seq | Graveley Lab | 734 | HiSeq2000 | 100 | paired-ended | 1 | | | | | ENCODE3 | | 12791 |
NT-BGHLV12-a_17742_AGTCAA_L006_R1_001.fastq.gz | ENCODE_DATA/set12/fastq | fastq | reads | knockdown followed by RNA-seq | Graveley Lab | 1158 | HiSeq2000 | 100 | paired-ended | 1 | | | | | ENCODE3 | | 12793 |
NT-BGHLV12-01_ATCACG_L001_R2_001.fastq.gz | ENCODE_DATA/set12/fastq | fastq | reads | knockdown followed by RNA-seq | Graveley Lab | 732 | HiSeq2000 | 100 | paired-ended | 2 | | | | | ENCODE3 | | 12858 |
NT-BGHLV12-93_GTGGCC_L007_R2_001.fastq.gz | ENCODE_DATA/set12/fastq | fastq | reads | knockdown followed by RNA-seq | Graveley Lab | 734 | HiSeq2000 | 100 | paired-ended | 2 | | | | | ENCODE3 | | 12860 |
NT-BGHLV12-a_17742_AGTCAA_L006_R2_001.fastq.gz | ENCODE_DATA/set12/fastq | fastq | reads | knockdown followed by RNA-seq | Graveley Lab | 1158 | HiSeq2000 | 100 | paired-ended | 2 | | | | | ENCODE3 | | 12862 |
NT-BGHLV12-01_Aligned.sortedByCoord.out.bam | ENCODE_DATA/set12/STAR_ENCORE2_file_links | bam | alignments | knockdown followed by RNA-seq | Graveley Lab | 732 | | | | | GRCh38 | V40 | NT-BGHLV12-01_ATCACG_L001_R1_001.fastq.gz,NT-BGHLV12-01_ATCACG_L001_R2_001.fastq.gz | | ENCORE2 | | 12928 |
NT-BGHLV12-93_Aligned.sortedByCoord.out.bam | ENCODE_DATA/set12/STAR_ENCORE2_file_links | bam | alignments | knockdown followed by RNA-seq | Graveley Lab | 734 | | | | | GRCh38 | V40 | NT-BGHLV12-93_GTGGCC_L007_R1_001.fastq.gz,NT-BGHLV12-93_GTGGCC_L007_R2_001.fastq.gz | | ENCORE2 | | 12930 |
NT-BGHLV12-a_17742_Aligned.sortedByCoord.out.bam | ENCODE_DATA/set12/STAR_ENCORE2_file_links | bam | alignments | knockdown followed by RNA-seq | Graveley Lab | 1158 | | | | | GRCh38 | V40 | NT-BGHLV12-a_17742_AGTCAA_L006_R1_001.fastq.gz,NT-BGHLV12-a_17742_AGTCAA_L006_R2_001.fastq.gz | | ENCORE2 | | 12932 |
NT-BGHLV12-01_Signal.Unique.strand+.bw | ENCODE_DATA/set12/STAR_ENCORE2_file_links | bigWig+unique | plus strand signal of unique reads | knockdown followed by RNA-seq | Graveley Lab | 732 | | | | | GRCh38 | V40 | NT-BGHLV12-01/Aligned.sortedByCoord.out.bam | | ENCORE2 | | 12998 |
NT-BGHLV12-93_Signal.Unique.strand+.bw | ENCODE_DATA/set12/STAR_ENCORE2_file_links | bigWig+unique | plus strand signal of unique reads | knockdown followed by RNA-seq | Graveley Lab | 734 | | | | | GRCh38 | V40 | NT-BGHLV12-93/Aligned.sortedByCoord.out.bam | | ENCORE2 | | 13000 |
NT-BGHLV12-a_17742_Signal.Unique.strand+.bw | ENCODE_DATA/set12/STAR_ENCORE2_file_links | bigWig+unique | plus strand signal of unique reads | knockdown followed by RNA-seq | Graveley Lab | 1158 | | | | | GRCh38 | V40 | NT-BGHLV12-a_17742/Aligned.sortedByCoord.out.bam | | ENCORE2 | | 13002 |
NT-BGHLV12-01_Signal.Unique.strand-.bw | ENCODE_DATA/set12/STAR_ENCORE2_file_links | bigWig-unique | minus strand signal of unique reads | knockdown followed by RNA-seq | Graveley Lab | 732 | | | | | GRCh38 | V40 | NT-BGHLV12-01/Aligned.sortedByCoord.out.bam | | ENCORE2 | | 13068 |
NT-BGHLV12-93_Signal.Unique.strand-.bw | ENCODE_DATA/set12/STAR_ENCORE2_file_links | bigWig-unique | minus strand signal of unique reads | knockdown followed by RNA-seq | Graveley Lab | 734 | | | | | GRCh38 | V40 | NT-BGHLV12-93/Aligned.sortedByCoord.out.bam | | ENCORE2 | | 13070 |
NT-BGHLV12-a_17742_Signal.Unique.strand-.bw | ENCODE_DATA/set12/STAR_ENCORE2_file_links | bigWig-unique | minus strand signal of unique reads | knockdown followed by RNA-seq | Graveley Lab | 1158 | | | | | GRCh38 | V40 | NT-BGHLV12-a_17742/Aligned.sortedByCoord.out.bam | | ENCORE2 | | 13072 |
NT-BGHLV12-01_Signal.UniqueMultiple.strand+.bw | ENCODE_DATA/set12/STAR_ENCORE2_file_links | bigWig+all | plus strand signal of all reads | knockdown followed by RNA-seq | Graveley Lab | 732 | | | | | GRCh38 | V40 | NT-BGHLV12-01/Aligned.sortedByCoord.out.bam | | ENCORE2 | | 13138 |
NT-BGHLV12-93_Signal.UniqueMultiple.strand+.bw | ENCODE_DATA/set12/STAR_ENCORE2_file_links | bigWig+all | plus strand signal of all reads | knockdown followed by RNA-seq | Graveley Lab | 734 | | | | | GRCh38 | V40 | NT-BGHLV12-93/Aligned.sortedByCoord.out.bam | | ENCORE2 | | 13140 |
NT-BGHLV12-a_17742_Signal.UniqueMultiple.strand+.bw | ENCODE_DATA/set12/STAR_ENCORE2_file_links | bigWig+all | plus strand signal of all reads | knockdown followed by RNA-seq | Graveley Lab | 1158 | | | | | GRCh38 | V40 | NT-BGHLV12-a_17742/Aligned.sortedByCoord.out.bam | | ENCORE2 | | 13142 |
NT-BGHLV12-01_Signal.UniqueMultiple.strand-.bw | ENCODE_DATA/set12/STAR_ENCORE2_file_links | bigWig-all | minus strand signal of all reads | knockdown followed by RNA-seq | Graveley Lab | 732 | | | | | GRCh38 | V40 | NT-BGHLV12-01/Aligned.sortedByCoord.out.bam | | ENCORE2 | | 13208 |
NT-BGHLV12-93_Signal.UniqueMultiple.strand-.bw | ENCODE_DATA/set12/STAR_ENCORE2_file_links | bigWig-all | minus strand signal of all reads | knockdown followed by RNA-seq | Graveley Lab | 734 | | | | | GRCh38 | V40 | NT-BGHLV12-93/Aligned.sortedByCoord.out.bam | | ENCORE2 | | 13210 |
NT-BGHLV12-a_17742_Signal.UniqueMultiple.strand-.bw | ENCODE_DATA/set12/STAR_ENCORE2_file_links | bigWig-all | minus strand signal of all reads | knockdown followed by RNA-seq | Graveley Lab | 1158 | | | | | GRCh38 | V40 | NT-BGHLV12-a_17742/Aligned.sortedByCoord.out.bam | | ENCORE2 | | 13212 |
NT-BGHLV12-01_quant.sf | ENCODE_DATA/set12/salmon_ENCORE2 | transcript_quantification | transcript quantifications | knockdown followed by RNA-seq | Graveley Lab | 732 | | | | | GRCh38 | V40 | NT-BGHLV12-01_ATCACG_L001_R1_001.fastq.gz,NT-BGHLV12-01_ATCACG_L001_R2_001.fastq.gz | | ENCORE2 | | 13278 |
NT-BGHLV12-93_quant.sf | ENCODE_DATA/set12/salmon_ENCORE2 | transcript_quantification | transcript quantifications | knockdown followed by RNA-seq | Graveley Lab | 734 | | | | | GRCh38 | V40 | NT-BGHLV12-93_GTGGCC_L007_R1_001.fastq.gz,NT-BGHLV12-93_GTGGCC_L007_R2_001.fastq.gz | | ENCORE2 | | 13280 |
NT-BGHLV12-a_17742_quant.sf | ENCODE_DATA/set12/salmon_ENCORE2 | transcript_quantification | transcript quantifications | knockdown followed by RNA-seq | Graveley Lab | 1158 | | | | | GRCh38 | V40 | NT-BGHLV12-a_17742_AGTCAA_L006_R1_001.fastq.gz,NT-BGHLV12-a_17742_AGTCAA_L006_R2_001.fastq.gz | | ENCORE2 | | 13282 |
NT-BGHLV12-02_CGATGT_L001_R1_001.fastq.gz | ENCODE_DATA/set12/fastq | fastq | reads | knockdown followed by RNA-seq | Graveley Lab | 733 | HiSeq2000 | 100 | paired-ended | 1 | | | | | ENCODE3 | | 12790 |
NT-BGHLV12-94_GTTTCG_L007_R1_001.fastq.gz | ENCODE_DATA/set12/fastq | fastq | reads | knockdown followed by RNA-seq | Graveley Lab | 735 | HiSeq2000 | 100 | paired-ended | 1 | | | | | ENCODE3 | | 12792 |
NT-BGHLV12-b_17743_AGTTCC_L006_R1_001.fastq.gz | ENCODE_DATA/set12/fastq | fastq | reads | knockdown followed by RNA-seq | Graveley Lab | 1159 | HiSeq2000 | 100 | paired-ended | 1 | | | | | ENCODE3 | | 12794 |
NT-BGHLV12-02_CGATGT_L001_R2_001.fastq.gz | ENCODE_DATA/set12/fastq | fastq | reads | knockdown followed by RNA-seq | Graveley Lab | 733 | HiSeq2000 | 100 | paired-ended | 2 | | | | | ENCODE3 | | 12859 |
NT-BGHLV12-94_GTTTCG_L007_R2_001.fastq.gz | ENCODE_DATA/set12/fastq | fastq | reads | knockdown followed by RNA-seq | Graveley Lab | 735 | HiSeq2000 | 100 | paired-ended | 2 | | | | | ENCODE3 | | 12861 |
NT-BGHLV12-b_17743_AGTTCC_L006_R2_001.fastq.gz | ENCODE_DATA/set12/fastq | fastq | reads | knockdown followed by RNA-seq | Graveley Lab | 1159 | HiSeq2000 | 100 | paired-ended | 2 | | | | | ENCODE3 | | 12863 |
NT-BGHLV12-02_Aligned.sortedByCoord.out.bam | ENCODE_DATA/set12/STAR_ENCORE2_file_links | bam | alignments | knockdown followed by RNA-seq | Graveley Lab | 733 | | | | | GRCh38 | V40 | NT-BGHLV12-02_CGATGT_L001_R1_001.fastq.gz,NT-BGHLV12-02_CGATGT_L001_R2_001.fastq.gz | | ENCORE2 | | 12929 |
NT-BGHLV12-94_Aligned.sortedByCoord.out.bam | ENCODE_DATA/set12/STAR_ENCORE2_file_links | bam | alignments | knockdown followed by RNA-seq | Graveley Lab | 735 | | | | | GRCh38 | V40 | NT-BGHLV12-94_GTTTCG_L007_R1_001.fastq.gz,NT-BGHLV12-94_GTTTCG_L007_R2_001.fastq.gz | | ENCORE2 | | 12931 |
NT-BGHLV12-b_17743_Aligned.sortedByCoord.out.bam | ENCODE_DATA/set12/STAR_ENCORE2_file_links | bam | alignments | knockdown followed by RNA-seq | Graveley Lab | 1159 | | | | | GRCh38 | V40 | NT-BGHLV12-b_17743_AGTTCC_L006_R1_001.fastq.gz,NT-BGHLV12-b_17743_AGTTCC_L006_R2_001.fastq.gz | | ENCORE2 | | 12933 |
NT-BGHLV12-02_Signal.Unique.strand+.bw | ENCODE_DATA/set12/STAR_ENCORE2_file_links | bigWig+unique | plus strand signal of unique reads | knockdown followed by RNA-seq | Graveley Lab | 733 | | | | | GRCh38 | V40 | NT-BGHLV12-02/Aligned.sortedByCoord.out.bam | | ENCORE2 | | 12999 |
NT-BGHLV12-94_Signal.Unique.strand+.bw | ENCODE_DATA/set12/STAR_ENCORE2_file_links | bigWig+unique | plus strand signal of unique reads | knockdown followed by RNA-seq | Graveley Lab | 735 | | | | | GRCh38 | V40 | NT-BGHLV12-94/Aligned.sortedByCoord.out.bam | | ENCORE2 | | 13001 |
NT-BGHLV12-b_17743_Signal.Unique.strand+.bw | ENCODE_DATA/set12/STAR_ENCORE2_file_links | bigWig+unique | plus strand signal of unique reads | knockdown followed by RNA-seq | Graveley Lab | 1159 | | | | | GRCh38 | V40 | NT-BGHLV12-b_17743/Aligned.sortedByCoord.out.bam | | ENCORE2 | | 13003 |
NT-BGHLV12-02_Signal.Unique.strand-.bw | ENCODE_DATA/set12/STAR_ENCORE2_file_links | bigWig-unique | minus strand signal of unique reads | knockdown followed by RNA-seq | Graveley Lab | 733 | | | | | GRCh38 | V40 | NT-BGHLV12-02/Aligned.sortedByCoord.out.bam | | ENCORE2 | | 13069 |
NT-BGHLV12-94_Signal.Unique.strand-.bw | ENCODE_DATA/set12/STAR_ENCORE2_file_links | bigWig-unique | minus strand signal of unique reads | knockdown followed by RNA-seq | Graveley Lab | 735 | | | | | GRCh38 | V40 | NT-BGHLV12-94/Aligned.sortedByCoord.out.bam | | ENCORE2 | | 13071 |
NT-BGHLV12-b_17743_Signal.Unique.strand-.bw | ENCODE_DATA/set12/STAR_ENCORE2_file_links | bigWig-unique | minus strand signal of unique reads | knockdown followed by RNA-seq | Graveley Lab | 1159 | | | | | GRCh38 | V40 | NT-BGHLV12-b_17743/Aligned.sortedByCoord.out.bam | | ENCORE2 | | 13073 |
NT-BGHLV12-02_Signal.UniqueMultiple.strand+.bw | ENCODE_DATA/set12/STAR_ENCORE2_file_links | bigWig+all | plus strand signal of all reads | knockdown followed by RNA-seq | Graveley Lab | 733 | | | | | GRCh38 | V40 | NT-BGHLV12-02/Aligned.sortedByCoord.out.bam | | ENCORE2 | | 13139 |
NT-BGHLV12-94_Signal.UniqueMultiple.strand+.bw | ENCODE_DATA/set12/STAR_ENCORE2_file_links | bigWig+all | plus strand signal of all reads | knockdown followed by RNA-seq | Graveley Lab | 735 | | | | | GRCh38 | V40 | NT-BGHLV12-94/Aligned.sortedByCoord.out.bam | | ENCORE2 | | 13141 |
NT-BGHLV12-b_17743_Signal.UniqueMultiple.strand+.bw | ENCODE_DATA/set12/STAR_ENCORE2_file_links | bigWig+all | plus strand signal of all reads | knockdown followed by RNA-seq | Graveley Lab | 1159 | | | | | GRCh38 | V40 | NT-BGHLV12-b_17743/Aligned.sortedByCoord.out.bam | | ENCORE2 | | 13143 |
NT-BGHLV12-02_Signal.UniqueMultiple.strand-.bw | ENCODE_DATA/set12/STAR_ENCORE2_file_links | bigWig-all | minus strand signal of all reads | knockdown followed by RNA-seq | Graveley Lab | 733 | | | | | GRCh38 | V40 | NT-BGHLV12-02/Aligned.sortedByCoord.out.bam | | ENCORE2 | | 13209 |
NT-BGHLV12-94_Signal.UniqueMultiple.strand-.bw | ENCODE_DATA/set12/STAR_ENCORE2_file_links | bigWig-all | minus strand signal of all reads | knockdown followed by RNA-seq | Graveley Lab | 735 | | | | | GRCh38 | V40 | NT-BGHLV12-94/Aligned.sortedByCoord.out.bam | | ENCORE2 | | 13211 |
NT-BGHLV12-b_17743_Signal.UniqueMultiple.strand-.bw | ENCODE_DATA/set12/STAR_ENCORE2_file_links | bigWig-all | minus strand signal of all reads | knockdown followed by RNA-seq | Graveley Lab | 1159 | | | | | GRCh38 | V40 | NT-BGHLV12-b_17743/Aligned.sortedByCoord.out.bam | | ENCORE2 | | 13213 |
NT-BGHLV12-02_quant.sf | ENCODE_DATA/set12/salmon_ENCORE2 | transcript_quantification | transcript quantifications | knockdown followed by RNA-seq | Graveley Lab | 733 | | | | | GRCh38 | V40 | NT-BGHLV12-02_CGATGT_L001_R1_001.fastq.gz,NT-BGHLV12-02_CGATGT_L001_R2_001.fastq.gz | | ENCORE2 | | 13279 |
NT-BGHLV12-94_quant.sf | ENCODE_DATA/set12/salmon_ENCORE2 | transcript_quantification | transcript quantifications | knockdown followed by RNA-seq | Graveley Lab | 735 | | | | | GRCh38 | V40 | NT-BGHLV12-94_GTTTCG_L007_R1_001.fastq.gz,NT-BGHLV12-94_GTTTCG_L007_R2_001.fastq.gz | | ENCORE2 | | 13281 |
NT-BGHLV12-b_17743_quant.sf | ENCODE_DATA/set12/salmon_ENCORE2 | transcript_quantification | transcript quantifications | knockdown followed by RNA-seq | Graveley Lab | 1159 | | | | | GRCh38 | V40 | NT-BGHLV12-b_17743_AGTTCC_L006_R1_001.fastq.gz,NT-BGHLV12-b_17743_AGTTCC_L006_R2_001.fastq.gz | | ENCORE2 | | 13283 |