MAGOH-BGHLV12-47_GGCTAC_L005_R1_001.fastq.gz | ENCODE_DATA/set12/fastq | fastq | reads | knockdown followed by RNA-seq | Graveley Lab | 726 | HiSeq2000 | 100 | paired-ended | 1 | | | | NT-BGHLV12-01_ATCACG_L001_R1_001.fastq.gz,NT-BGHLV12-02_CGATGT_L001_R1_001.fastq.gz | ENCODE3 | | 12783 |
MAGOH-BGHLV12-47_GGCTAC_L005_R2_001.fastq.gz | ENCODE_DATA/set12/fastq | fastq | reads | knockdown followed by RNA-seq | Graveley Lab | 726 | HiSeq2000 | 100 | paired-ended | 2 | | | | NT-BGHLV12-01_ATCACG_L001_R2_001.fastq.gz,NT-BGHLV12-02_CGATGT_L001_R2_001.fastq.gz | ENCODE3 | | 12852 |
MAGOH-BGHLV12-47_Aligned.sortedByCoord.out.bam | ENCODE_DATA/set12/STAR_ENCORE2_file_links | bam | alignments | knockdown followed by RNA-seq | Graveley Lab | 726 | | | | | GRCh38 | V40 | MAGOH-BGHLV12-47_GGCTAC_L005_R1_001.fastq.gz,MAGOH-BGHLV12-47_GGCTAC_L005_R2_001.fastq.gz | | ENCORE2 | | 12922 |
MAGOH-BGHLV12-47_Signal.Unique.strand+.bw | ENCODE_DATA/set12/STAR_ENCORE2_file_links | bigWig+unique | plus strand signal of unique reads | knockdown followed by RNA-seq | Graveley Lab | 726 | | | | | GRCh38 | V40 | MAGOH-BGHLV12-47/Aligned.sortedByCoord.out.bam | | ENCORE2 | | 12992 |
MAGOH-BGHLV12-47_Signal.Unique.strand-.bw | ENCODE_DATA/set12/STAR_ENCORE2_file_links | bigWig-unique | minus strand signal of unique reads | knockdown followed by RNA-seq | Graveley Lab | 726 | | | | | GRCh38 | V40 | MAGOH-BGHLV12-47/Aligned.sortedByCoord.out.bam | | ENCORE2 | | 13062 |
MAGOH-BGHLV12-47_Signal.UniqueMultiple.strand+.bw | ENCODE_DATA/set12/STAR_ENCORE2_file_links | bigWig+all | plus strand signal of all reads | knockdown followed by RNA-seq | Graveley Lab | 726 | | | | | GRCh38 | V40 | MAGOH-BGHLV12-47/Aligned.sortedByCoord.out.bam | | ENCORE2 | | 13132 |
MAGOH-BGHLV12-47_Signal.UniqueMultiple.strand-.bw | ENCODE_DATA/set12/STAR_ENCORE2_file_links | bigWig-all | minus strand signal of all reads | knockdown followed by RNA-seq | Graveley Lab | 726 | | | | | GRCh38 | V40 | MAGOH-BGHLV12-47/Aligned.sortedByCoord.out.bam | | ENCORE2 | | 13202 |
MAGOH-BGHLV12-47_quant.sf | ENCODE_DATA/set12/salmon_ENCORE2 | transcript_quantification | transcript quantifications | knockdown followed by RNA-seq | Graveley Lab | 726 | | | | | GRCh38 | V40 | MAGOH-BGHLV12-47_GGCTAC_L005_R1_001.fastq.gz,MAGOH-BGHLV12-47_GGCTAC_L005_R2_001.fastq.gz | | ENCORE2 | | 13272 |
MAGOH-BGHLV12-48_CTTGTA_L006_R1_001.fastq.gz | ENCODE_DATA/set12/fastq | fastq | reads | knockdown followed by RNA-seq | Graveley Lab | 727 | HiSeq2000 | 100 | paired-ended | 1 | | | | NT-BGHLV12-01_ATCACG_L001_R1_001.fastq.gz,NT-BGHLV12-02_CGATGT_L001_R1_001.fastq.gz | ENCODE3 | | 12784 |
MAGOH-BGHLV12-48_CTTGTA_L006_R2_001.fastq.gz | ENCODE_DATA/set12/fastq | fastq | reads | knockdown followed by RNA-seq | Graveley Lab | 727 | HiSeq2000 | 100 | paired-ended | 2 | | | | NT-BGHLV12-01_ATCACG_L001_R2_001.fastq.gz,NT-BGHLV12-02_CGATGT_L001_R2_001.fastq.gz | ENCODE3 | | 12853 |
MAGOH-BGHLV12-48_Aligned.sortedByCoord.out.bam | ENCODE_DATA/set12/STAR_ENCORE2_file_links | bam | alignments | knockdown followed by RNA-seq | Graveley Lab | 727 | | | | | GRCh38 | V40 | MAGOH-BGHLV12-48_CTTGTA_L006_R1_001.fastq.gz,MAGOH-BGHLV12-48_CTTGTA_L006_R2_001.fastq.gz | | ENCORE2 | | 12923 |
MAGOH-BGHLV12-48_Signal.Unique.strand+.bw | ENCODE_DATA/set12/STAR_ENCORE2_file_links | bigWig+unique | plus strand signal of unique reads | knockdown followed by RNA-seq | Graveley Lab | 727 | | | | | GRCh38 | V40 | MAGOH-BGHLV12-48/Aligned.sortedByCoord.out.bam | | ENCORE2 | | 12993 |
MAGOH-BGHLV12-48_Signal.Unique.strand-.bw | ENCODE_DATA/set12/STAR_ENCORE2_file_links | bigWig-unique | minus strand signal of unique reads | knockdown followed by RNA-seq | Graveley Lab | 727 | | | | | GRCh38 | V40 | MAGOH-BGHLV12-48/Aligned.sortedByCoord.out.bam | | ENCORE2 | | 13063 |
MAGOH-BGHLV12-48_Signal.UniqueMultiple.strand+.bw | ENCODE_DATA/set12/STAR_ENCORE2_file_links | bigWig+all | plus strand signal of all reads | knockdown followed by RNA-seq | Graveley Lab | 727 | | | | | GRCh38 | V40 | MAGOH-BGHLV12-48/Aligned.sortedByCoord.out.bam | | ENCORE2 | | 13133 |
MAGOH-BGHLV12-48_Signal.UniqueMultiple.strand-.bw | ENCODE_DATA/set12/STAR_ENCORE2_file_links | bigWig-all | minus strand signal of all reads | knockdown followed by RNA-seq | Graveley Lab | 727 | | | | | GRCh38 | V40 | MAGOH-BGHLV12-48/Aligned.sortedByCoord.out.bam | | ENCORE2 | | 13203 |
MAGOH-BGHLV12-48_quant.sf | ENCODE_DATA/set12/salmon_ENCORE2 | transcript_quantification | transcript quantifications | knockdown followed by RNA-seq | Graveley Lab | 727 | | | | | GRCh38 | V40 | MAGOH-BGHLV12-48_CTTGTA_L006_R1_001.fastq.gz,MAGOH-BGHLV12-48_CTTGTA_L006_R2_001.fastq.gz | | ENCORE2 | | 13273 |