TRIM55

General Information

Gene Name : TRIM55
Gene ID : ENSG00000147573.16
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: TRIM55)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	TRIM55	ENSG00000147573.16	0.10	0.05	0.08	ENCSR000AEF
HepG2	TRIM55	ENSG00000147573.16	0.05	0.01	0.03	ENCSR985KAT
K562	TRIM55	ENSG00000147573.16	0.03	0.09	0.06	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

GeneName	Cell_Line	Method	Sample_reps	Control_reps	KD%	Status	Project
TRIM55	HepG2	shRNA	BGHLV18-63,BGHLV18-64	BGHLV18-1,BGHLV18-2		NotSatisfied	ENCODE3
TRIM55	Ribo-STAMP-293T	shRNA	BGRSLV02-53,BGRSLV02-54	BGRSLV02-1,BGRSLV02-2		NotSatisfied	ENCORE2
TRIM55	Ribo-STAMP-293T	shRNA	BGRSDLV04-97,BGRSDLV04-98	BGRSDLV04-1,BGRSDLV04-2		Submitted	ENCORE2
TRIM55	Ribo-STAMP-293T	shRNA	BGRSDLV04-99dox,BGRSDLV04-100dox	BGRSDLV04-1,BGRSDLV04-2		Submitted	ENCORE2
TRIM55	Ribo-STAMP-293T	shRNA	BGRSDLV04-101,BGRSDLV04-102	BGRSDLV04-1,BGRSDLV04-2		Submitted	ENCORE2
TRIM55	Ribo-STAMP-293T	shRNA	TRIM55-BGRSDLV04-103dox,TRIM55-BGRSDLV04-104dox	NT-BGRSDLV04-3dox,NT-BGRSDLV04-4dox	,	Submitted	ENCORE2

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary

RNA Targets

eCLIP assay for TRIM55 is not avaliable on ENCORE database.

Proteins bound to RNA

NO known proteins bind on TRIM55 RNA with finished eCLIP experiments on ENCORE database.

eCLIP assay for TRIM55 is not avaliable on ENCORE database.

NO known proteins are bound to TRIM55 RNA with finished eCLIP experiments on ENCORE database.

eCLIP assay for TRIM55 is not avaliable on ENCORE database.

Summary
DE Affected by

Diffrential Expression

The Knockdown/knockout assay for TRIM55 is not available on ENCORE database.
2 RBPs can affect the levels of TRIM55.

The Knockdown/knockout RNA-Seq assay for TRIM55 is not available on ENCORE database.

2 RBPs can affect the gene expression of TRIM55 :

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
TRIM55	ENSG00000147573.12	15.08890	0.00000	99999.99990	4.32690	3.53140	HepG2	EIF4A3
TRIM55	ENSG00000147573.12	5.87450	0.00000	99999.99990	1.79900	1.36360	HepG2	SSB
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

TRIM55

General Information

Functions

Localization

Domains (AlphaFold: TRIM55)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for TRIM55 is not avaliable on ENCORE database.

NO known proteins are bound to TRIM55 RNA with finished eCLIP experiments on ENCORE database.

eCLIP assay for TRIM55 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for TRIM55 is not available on ENCORE database.

2 RBPs can affect the gene expression of TRIM55 :

The Knockdown/knockout RNA-Seq assay for TRIM55 is not available on ENCORE database.

No RBPs affect the alternative splcing events of TRIM55 on ENCORE database.

The Knockdown/knockout RNA-Seq assay for TRIM55 is not avaliable on ENCORE database.