SCARNA15

General Information

Gene Name       : SCARNA15
Gene ID             : ENSG00000277864.1
Essential Gene : No

Functions

Localization

Domains (AlphaFold: SCARNA15)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878SCARNA15ENSG00000277864.10.000.000.00ENCSR000AEF
HepG2SCARNA15ENSG00000277864.10.000.000.00ENCSR985KAT
K562SCARNA15ENSG00000277864.10.000.000.00ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for SCARNA15 is not avaliable on ENCORE database.



Proteins bound to RNA

  • NO known proteins bind on SCARNA15 RNA with finished eCLIP experiments on ENCORE database.





eCLIP assay for SCARNA15 is not avaliable on ENCORE database.






NO known proteins are bound to SCARNA15 RNA with finished eCLIP experiments on ENCORE database.





eCLIP assay for SCARNA15 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for SCARNA15 is not available on ENCORE database.

  • 38 RBPs can affect the levels of SCARNA15.  








The Knockdown/knockout RNA-Seq assay for SCARNA15 is not available on ENCORE database.





38 RBPs can affect the gene expression of SCARNA15 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
SCARNA15ENSG00000252690.228.7710065.30970-1.182703.314502.65910HepG2ACO1
SCARNA15ENSG00000252690.2104.1150065.310500.672702.128401.53370HepG2CKAP4
SCARNA15ENSG00000252690.283.8520029.389401.512404.704703.94330HepG2EIF2S1
SCARNA15ENSG00000252690.266.4834032.490901.032902.434301.83290HepG2EIF4A3
SCARNA15ENSG00000252690.2149.1214095.033700.649902.112801.36530HepG2EIF4G1
SCARNA15ENSG00000252690.288.6980030.733201.529004.875003.96890HepG2HNRNPK
SCARNA15ENSG00000252690.271.8118033.726801.090202.560401.94880HepG2NCBP2
SCARNA15ENSG00000252690.273.9012030.058101.297703.665702.84230HepG2PABPC4
SCARNA15ENSG00000252690.263.0258032.955500.935302.223101.66800HepG2PCBP1
SCARNA15ENSG00000252690.281.2315041.094900.983002.518301.74630HepG2PRPF8
SCARNA15ENSG00000252690.268.1710033.536001.023302.677702.13810HepG2PTBP1
SCARNA15ENSG00000252690.259.2311096.74230-0.707802.102701.51360HepG2PUM2
SCARNA15ENSG00000252690.298.8889036.314901.445105.323404.49790HepG2QKI
SCARNA15ENSG00000252690.272.1696032.960101.130603.004002.30510HepG2RBM25
SCARNA15ENSG00000252690.2107.1702053.015901.015303.503802.38040HepG2RBM27
SCARNA15ENSG00000252690.2133.1088057.726401.205204.981204.05940HepG2SF3A3
SCARNA15ENSG00000252690.274.2429034.910701.088502.890902.28900HepG2SF3B4
SCARNA15ENSG00000252690.240.0248090.03320-1.169603.823003.10850HepG2SRSF5
SCARNA15ENSG00000252690.262.75990102.40920-0.706402.238001.66780HepG2SUCLG1
SCARNA15ENSG00000252690.283.5447032.760001.350503.999703.34470HepG2TAF15
SCARNA15ENSG00000252690.276.9888031.318701.297504.261103.31880HepG2UCHL5
SCARNA15ENSG00000252690.299.7945052.182100.935302.602201.89880HepG2XRN2
SCARNA15ENSG00000252690.2258.42120171.351100.592703.426902.80790K562AGGF1
SCARNA15ENSG00000252690.2837.12170222.644901.9106035.9530034.04900K562AQR
SCARNA15ENSG00000252690.2258.54550187.091000.466602.506601.64000K562ATP5C1
SCARNA15ENSG00000252690.273.98030132.61630-0.842002.543601.30470K562DDX6
SCARNA15ENSG00000252690.279.22640136.62390-0.786202.973502.09270K562FIP1L1
SCARNA15ENSG00000252690.2201.44570117.097300.782603.295302.12350K562HNRNPA1
SCARNA15ENSG00000252690.258.21950199.85570-1.779406.920003.57110K562HNRNPUL1
SCARNA15ENSG00000252690.292.43170162.01360-0.809703.884702.41990K562IGF2BP3
SCARNA15ENSG00000252690.271.97190134.07080-0.897503.435002.45390K562METAP2
SCARNA15ENSG00000252690.2157.7497097.806700.689502.300601.61440K562PRPF8
SCARNA15ENSG00000252690.283.66330162.64720-0.959105.091804.21420K562PTBP1
SCARNA15ENSG00000252690.2251.82230176.796400.510202.183301.68950K562PUS1
SCARNA15ENSG00000252690.294.04990158.66040-0.754402.459701.52150K562RPS3
SCARNA15ENSG00000252690.283.42120153.20730-0.877003.402802.22040K562SRSF4
SCARNA15ENSG00000252690.294.86000161.37390-0.766503.238202.47310K562TARDBP
SCARNA15ENSG00000252690.2100.19130155.66260-0.635702.403901.64700K562TIA1
SCARNA15ENSG00000252690.264.62030173.04050-1.421008.894906.58900K562TROVE2
SCARNA15ENSG00000252690.251.17750100.22500-0.969702.925401.87310K562UCHL5
SCARNA15ENSG00000252690.2187.74190125.488400.581102.468301.63960K562WDR3
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for SCARNA15 is not available on ENCORE database.






No RBPs affect the alternative splcing events of SCARNA15 on ENCORE database.





The Knockdown/knockout RNA-Seq assay for SCARNA15 is not avaliable on ENCORE database.