RP11-400D2.2

General Information

Gene Name : RP11-400D2.2
Gene ID :
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: RP11-400D2.2)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for RP11-400D2.2 is not avaliable on ENCORE database.

Proteins bound to RNA

RP11-400D2.2 RNA is bound by 5 proteins.

eCLIP assay for RP11-400D2.2 is not avaliable on ENCORE database.

5 proteins are bound to RP11-400D2.2 RNA:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr4	135230958	135231071	-	intron-Distal	5.44536	7.47823	K562	QKI
chr4	135217045	135217086	-	intron-Distal	4.25472	7.61413	K562	EXOSC5
chr4	135215897	135215926	-	intron-Distal	3.99081	5.50914	K562	EXOSC5
chr4	135216724	135216759	-	intron-Distal	4.00702	6.10949	K562	EXOSC5
chr4	135216050	135216091	-	intron-Distal	5.38624	8.69609	K562	EXOSC5
chr4	135215792	135215826	-	intron-Distal	4.65504	4.80399	K562	EXOSC5
chr4	135216798	135216844	-	intron-Distal	5.21641	16.12795	K562	EXOSC5
chr4	135214777	135214853	-	intron-Distal	4.36947	9.10500	K562	EXOSC5
chr4	135216182	135216213	-	intron-Distal	4.92655	6.73640	K562	EXOSC5
chr4	135217526	135217570	-	intron-Distal	5.11477	5.44433	K562	EXOSC5
chr4	135216004	135216037	-	intron-Distal	4.83469	6.08869	K562	EXOSC5
chr4	135214853	135214896	-	intron-Distal	4.50702	5.12361	K562	EXOSC5
chr4	135227647	135227745	-	intron-Distal	4.91484	4.99795	K562	QKI
chr4	135217203	135217229	-	intron-Distal	4.81274	6.41304	K562	EXOSC5
chr4	135228627	135228716	-	intron-Distal,intron-Proximal	3.55968	4.35635	K562	PRPF8
chr4	135217936	135217985	-	intron-Distal	4.78465	6.73640	K562	EXOSC5
chr4	135217114	135217161	-	intron-Distal	5.82895	13.98677	K562	EXOSC5
chr4	135216297	135216327	-	intron-Distal	4.00255	8.78073	K562	EXOSC5
chr4	135176449	135176614	-	intron-Distal	3.27597	4.55496	K562	SAFB2
chr4	135216327	135216381	-	intron-Distal	4.66477	15.17605	K562	EXOSC5
chr4	135221263	135221351	-	intron-Distal	3.05057	3.29355	K562	TARDBP
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

eCLIP assay for RP11-400D2.2 is not avaliable on ENCORE database.

Summary
DE Affected by

Diffrential Expression

The Knockdown/knockout assay for RP11-400D2.2 is not available on ENCORE database.
13 RBPs can affect the levels of RP11-400D2.2.

The Knockdown/knockout RNA-Seq assay for RP11-400D2.2 is not available on ENCORE database.

13 RBPs can affect the gene expression of RP11-400D2.2 :

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
RP11-400D2.2	ENSG00000251199.1	30.14890	79.26130	-1.39450	3.74600	3.10390	K562	AGGF1
RP11-400D2.2	ENSG00000251199.1	37.82480	87.07390	-1.20290	3.15310	2.08840	K562	AKAP8
RP11-400D2.2	ENSG00000251199.1	22.97960	82.46950	-1.84350	5.22470	4.31480	K562	AKAP8L
RP11-400D2.2	ENSG00000251199.1	37.63930	86.52000	-1.20080	3.16310	2.18240	K562	ATP5C1
RP11-400D2.2	ENSG00000251199.1	38.17660	94.73940	-1.31130	3.51150	2.16070	K562	CCDC124
RP11-400D2.2	ENSG00000251199.1	26.94740	88.77740	-1.72000	5.05620	3.82000	K562	DKC1
RP11-400D2.2	ENSG00000251199.1	35.87430	87.53990	-1.28700	3.64300	2.68020	K562	KIF1C
RP11-400D2.2	ENSG00000251199.1	20.67160	83.78170	-2.01900	6.03700	4.22080	K562	MAK16
RP11-400D2.2	ENSG00000251199.1	29.54820	98.06410	-1.73070	3.86970	2.76610	K562	MBNL1
RP11-400D2.2	ENSG00000251199.1	18.18750	68.73420	-1.91810	4.21930	3.06220	K562	NAA15
RP11-400D2.2	ENSG00000251199.1	18.13350	81.82630	-2.17390	6.22130	5.44680	K562	PUS1
RP11-400D2.2	ENSG00000251199.1	21.84020	79.69490	-1.86750	4.61470	3.86880	K562	RBM15
RP11-400D2.2	ENSG00000251199.1	27.42740	82.92370	-1.59620	3.50810	1.99490	K562	UTP18
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

RP11-400D2.2

General Information

Functions

Localization

Domains (AlphaFold: RP11-400D2.2)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for RP11-400D2.2 is not avaliable on ENCORE database.

5 proteins are bound to RP11-400D2.2 RNA:

eCLIP assay for RP11-400D2.2 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for RP11-400D2.2 is not available on ENCORE database.

13 RBPs can affect the gene expression of RP11-400D2.2 :

The Knockdown/knockout RNA-Seq assay for RP11-400D2.2 is not available on ENCORE database.

No RBPs affect the alternative splcing events of RP11-400D2.2 on ENCORE database.

The Knockdown/knockout RNA-Seq assay for RP11-400D2.2 is not avaliable on ENCORE database.