RP11-302M6.4

General Information

Gene Name : RP11-302M6.4
Gene ID :
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: RP11-302M6.4)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for RP11-302M6.4 is not avaliable on ENCORE database.

Proteins bound to RNA

RP11-302M6.4 RNA is bound by 43 proteins.

eCLIP assay for RP11-302M6.4 is not avaliable on ENCORE database.

43 proteins are bound to RP11-302M6.4 RNA:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr1	90309337	90309395	+	3'-UTR,5'-UTR,intron-Proximal	4.15228	3.25089	HepG2	AQR
chr1	90309206	90309320	+	3'-UTR,5'-UTR,CDS	3.13218	5.71745	HepG2	SRSF1
chr1	90398777	90398824	+	3'-UTR,CDS	4.33851	5.35091	K562	PUM2
chr1	90398728	90398797	+	3'-UTR,CDS	4.00219	3.73331	K562	RBM15
chr1	90309326	90309407	+	3'-UTR,5'-UTR,intron-Proximal	3.63828	6.70706	HepG2	EFTUD2
chr1	90309316	90309397	+	3'-UTR,5'-UTR,intron-Proximal	3.89901	46.11697	HepG2	PRPF8
chr1	90098716	90098820	+	5'-UTR,intron-Distal	4.82643	4.54356	K562	DDX3X
chr1	90287821	90287875	+	intron-Distal,intron-Proximal	3.61396	5.61462	HepG2	PRPF4
chr1	90286865	90286918	+	intron-Distal,intron-Proximal	4.66899	8.99338	HepG2	NKRF
chr1	90388620	90388704	+	intron-Distal	3.16088	3.06005	HepG2	QKI
chr1	90362297	90362374	+	intron-Distal	4.35177	14.07100	HepG2	PTBP1
chr1	90334881	90334933	+	intron-Distal	4.30532	4.43680	K562	ZNF622
chr1	90318303	90318346	+	intron-Distal	3.46209	3.66782	HepG2	HNRNPM
chr1	90300449	90300502	+	intron-Distal	3.42241	3.15824	K562	FTO
chr1	90320115	90320164	+	intron-Distal	4.32686	3.37054	HepG2	XPO5
chr1	90337264	90337305	+	intron-Distal	3.79480	3.94088	HepG2	QKI
chr1	90287488	90287544	+	5'-UTR,intron-Distal	3.63341	4.48585	K562	NONO
chr1	90308549	90308639	+	5'-UTR,intron-Distal	3.86678	5.30350	K562	HNRNPM
chr1	90348773	90348851	+	intron-Distal	3.21209	6.03756	K562	TARDBP
chr1	90286721	90286793	+	5'-UTR,intron-Distal	3.24892	4.02244	HepG2	NCBP2
chr1	90309747	90309788	+	intron-Distal	4.10594	4.10323	HepG2	PRPF4
chr1	90329154	90329188	+	intron-Distal	3.06681	4.19275	K562	EXOSC5
chr1	90390487	90390544	+	intron-Distal	4.93668	3.08884	K562	WRN
chr1	90345224	90345276	+	intron-Distal	3.70511	5.98773	K562	KHSRP
chr1	90309041	90309097	+	5'-UTR,intron-Distal	3.61432	3.47525	HepG2	DGCR8
chr1	90308809	90308878	+	intron-Distal,intron-Proximal	3.19092	3.19733	K562	ZNF622
chr1	90353930	90353985	+	intron-Distal	3.68515	3.21433	HepG2	TAF15
chr1	90116327	90116419	+	intron-Distal	3.17815	3.81590	K562	HNRNPL
chr1	90130562	90130608	+	intron-Distal	4.21454	3.89085	K562	EXOSC5
chr1	90308556	90308627	+	5'-UTR,intron-Distal	3.32644	5.58948	HepG2	HNRNPM
chr1	90372764	90372813	+	intron-Distal	4.14549	8.19079	HepG2	HNRNPC
chr1	90356810	90356915	+	intron-Distal	4.06454	3.57543	K562	ILF3
chr1	90357435	90357570	+	intron-Distal	4.06006	15.53840	HepG2	QKI
chr1	90287377	90287457	+	intron-Distal	4.06659	7.97376	K562	XRN2
chr1	90309757	90309845	+	intron-Distal	3.96419	7.21436	K562	GTF2F1
chr1	90287381	90287459	+	intron-Distal	6.21482	17.56654	HepG2	XRN2
chr1	90337282	90337314	+	intron-Distal	3.58942	4.76825	K562	KHSRP
chr1	90309752	90309863	+	intron-Distal	3.91637	10.18977	HepG2	GTF2F1
chr1	90309748	90309825	+	intron-Distal	4.09886	4.94367	HepG2	PCBP2
chr1	90345305	90345377	+	intron-Distal	3.36035	5.78064	K562	KHSRP
chr1	90300746	90300808	+	intron-Distal	4.15134	4.87260	HepG2	HNRNPM
chr1	90287066	90287140	+	intron-Distal	4.02540	23.21895	HepG2	NKRF
chr1	90287220	90287270	+	intron-Distal	4.04106	10.85520	HepG2	NKRF
chr1	90357421	90357511	+	intron-Distal	3.65493	3.93724	HepG2	HNRNPK
chr1	90287487	90287557	+	5'-UTR,intron-Distal	4.98146	20.53017	HepG2	NKRF
chr1	90309425	90309479	+	intron-Distal,intron-Proximal	3.82688	5.15019	HepG2	EFTUD2
chr1	90130989	90131042	+	intron-Distal	4.83469	6.08869	K562	EXOSC5
chr1	90377373	90377586	+	intron-Distal	4.34676	4.28254	HepG2	MATR3
chr1	90329221	90329276	+	intron-Distal	4.79574	6.45442	HepG2	HNRNPM
chr1	90286991	90287066	+	intron-Distal	3.25761	13.95491	HepG2	NKRF
chr1	90287399	90287487	+	5'-UTR,intron-Distal	6.07680	44.96640	HepG2	NKRF
chr1	90317080	90317142	+	intron-Distal	4.16273	3.60940	HepG2	HNRNPC
chr1	90287850	90287927	+	intron-Distal	4.35223	4.69312	K562	TAF15
chr1	90318900	90318963	+	intron-Distal	3.78569	6.66781	HepG2	HNRNPM
chr1	90318403	90318467	+	intron-Distal	4.40950	3.79821	HepG2	BCCIP
chr1	90388807	90388867	+	intron-Distal	4.25180	5.25174	K562	KHSRP
chr1	90314000	90314118	+	intron-Distal	4.58413	4.66266	K562	TARDBP
chr1	90388533	90388615	+	intron-Distal	6.31085	13.16771	K562	QKI
chr1	90308957	90309057	+	5'-UTR,intron-Distal	4.23972	6.59856	K562	SF3B4
chr1	90308963	90309041	+	5'-UTR,intron-Distal	3.94308	3.05559	HepG2	DGCR8
chr1	90385741	90385825	+	intron-Distal	3.83423	7.41217	HepG2	QKI
chr1	90345486	90345577	+	intron-Distal	3.05570	3.47308	HepG2	TAF15
chr1	90374576	90374659	+	intron-Distal	3.17865	6.27048	K562	TARDBP
chr1	90309029	90309062	+	5'-UTR,intron-Distal	3.63068	5.10213	HepG2	NKRF
chr1	90308793	90308881	+	intron-Distal,intron-Proximal	3.13865	7.68772	HepG2	NKRF
chr1	90286872	90286942	+	intron-Distal,intron-Proximal	3.60199	5.19978	HepG2	BUD13
chr1	90388552	90388620	+	intron-Distal	3.20984	3.51714	HepG2	QKI
chr1	90367040	90367141	+	intron-Distal	3.15055	6.91621	HepG2	PCBP2
chr1	90337160	90337257	+	intron-Distal	6.38152	29.87677	K562	QKI
chr1	90380550	90380654	+	intron-Distal	4.42247	3.72755	K562	EIF4G2
chr1	90153124	90153213	+	intron-Distal	4.19874	4.95197	K562	SAFB2
chr1	90327588	90327724	+	intron-Distal	3.46746	5.33081	K562	LSM11
chr1	90361793	90361897	+	intron-Distal	3.72784	4.45974	HepG2	GTF2F1
chr1	90326957	90327032	+	intron-Distal	4.52460	7.56720	K562	PTBP1
chr1	90354711	90354814	+	intron-Distal	3.96985	3.31709	K562	ILF3
chr1	90337257	90337282	+	intron-Distal	4.43263	5.85485	K562	KHSRP
chr1	90287329	90287400	+	intron-Distal	3.85441	13.08437	HepG2	CSTF2T
chr1	90345301	90345382	+	intron-Distal	3.49818	4.87589	HepG2	QKI
chr1	90390739	90390814	+	intron-Distal	3.68217	3.52118	K562	XRCC6
chr1	90228152	90228210	+	intron-Distal	4.49747	3.52630	K562	AGGF1
chr1	90391621	90391708	+	intron-Distal	4.41758	9.36623	HepG2	PCBP2
chr1	90330074	90330168	+	intron-Distal	3.43194	4.51915	K562	MATR3
chr1	90329396	90329438	+	intron-Distal	3.49565	3.90822	HepG2	HNRNPM
chr1	90345038	90345098	+	intron-Distal	3.70511	5.98773	K562	KHSRP
chr1	90302674	90302697	+	intron-Distal	3.72878	3.16028	HepG2	SUGP2
chr1	90308810	90308886	+	intron-Distal,intron-Proximal	3.64292	6.25732	K562	DDX24
chr1	90357364	90357535	+	intron-Distal	3.23514	5.07140	HepG2	PTBP1
chr1	90286882	90286942	+	intron-Distal,intron-Proximal	3.21413	5.59719	HepG2	CSTF2T
chr1	90286995	90287054	+	intron-Distal	5.71897	12.42683	HepG2	XRN2
chr1	90380586	90380665	+	intron-Distal	6.52291	23.26700	K562	TARDBP
chr1	90374587	90374669	+	intron-Distal	4.37796	3.94682	K562	EIF4G2
chr1	90130222	90130273	+	intron-Distal	4.37309	3.30687	K562	EXOSC5
chr1	90291532	90291576	+	intron-Distal	4.16119	8.02251	HepG2	HNRNPM
chr1	90287375	90287399	+	intron-Distal	5.71232	30.25601	HepG2	NKRF
chr1	90326988	90327051	+	intron-Distal	3.16247	6.13768	HepG2	PTBP1
chr1	90364274	90364358	+	intron-Distal	4.15783	4.42851	K562	HNRNPL
chr1	90315367	90315433	+	intron-Distal	3.26758	4.70908	HepG2	QKI
chr1	90319764	90319842	+	intron-Distal	5.33057	7.78465	HepG2	HNRNPM
chr1	90316263	90316333	+	intron-Distal	3.14929	3.07751	K562	KHSRP
chr1	90390544	90390634	+	intron-Distal	5.94623	13.16997	K562	WRN
chr1	90329763	90329793	+	intron-Distal	4.31389	3.60235	HepG2	HNRNPM
chr1	90355354	90355427	+	intron-Distal	4.14783	3.95871	HepG2	ILF3
chr1	90308970	90309012	+	5'-UTR,intron-Distal	5.38358	8.50632	HepG2	XRN2
chr1	90329969	90330045	+	intron-Distal	3.04663	3.63194	K562	HNRNPL
chr1	90309773	90309866	+	intron-Distal	3.17661	5.57692	K562	CSTF2T
chr1	90302261	90302304	+	intron-Distal	4.34602	4.36036	HepG2	SUGP2
chr1	90377091	90377203	+	intron-Distal	3.10653	5.61954	HepG2	PCBP2
chr1	90309012	90309066	+	5'-UTR,intron-Distal	3.14229	3.86003	HepG2	XRN2
chr1	90308944	90309064	+	5'-UTR,intron-Distal	3.57052	6.71496	HepG2	CSTF2T
chr1	90355386	90355437	+	intron-Distal	4.72082	6.96007	HepG2	XPO5
chr1	90344051	90344101	+	intron-Distal	4.55841	3.62366	HepG2	HNRNPM
chr1	90338207	90338256	+	intron-Distal	3.24665	3.90146	K562	KHSRP
chr1	90287557	90287641	+	5'-UTR,intron-Distal	4.42578	19.38156	HepG2	NKRF
chr1	90362299	90362366	+	intron-Distal	6.31593	32.52013	K562	PTBP1
chr1	90316683	90316795	+	intron-Distal	3.90657	13.48200	HepG2	HNRNPM
chr1	90287842	90287933	+	intron-Distal,intron-Proximal	3.06742	3.21873	K562	GTF2F1
chr1	90320303	90320369	+	intron-Distal	3.42741	4.14346	HepG2	SUGP2
chr1	90287342	90287381	+	intron-Distal	4.08173	9.04630	HepG2	XRN2
chr1	90287877	90287896	+	intron-Distal	3.20693	4.64240	HepG2	XRN2
chr1	90308945	90309029	+	5'-UTR,intron-Distal	3.44611	7.47980	HepG2	NKRF
chr1	90287317	90287375	+	intron-Distal	4.73150	18.37961	HepG2	NKRF
chr1	90316685	90316751	+	intron-Distal	5.01222	7.38107	K562	HNRNPM
chr1	90287077	90287161	+	intron-Distal	3.35070	7.81475	HepG2	CSTF2T
chr1	90318392	90318480	+	intron-Distal	3.60946	10.51999	HepG2	HNRNPM
chr1	90329470	90329549	+	intron-Distal	3.65792	10.19216	HepG2	HNRNPM
chr1	90337173	90337259	+	intron-Distal	5.63366	36.91569	HepG2	QKI
chr1	90329152	90329203	+	intron-Distal	4.11198	6.29995	HepG2	HNRNPM
chr1	90340016	90340102	+	intron-Distal	5.00521	7.51195	K562	TARDBP
chr1	90331001	90331051	+	intron-Distal	3.78703	3.06411	K562	KHDRBS1
chr1	90302814	90302887	+	intron-Distal	3.04412	3.95507	HepG2	SUGP2
chr1	90286589	90286664	+	5'-UTR,intron-Distal	3.71997	5.36773	HepG2	NCBP2
chr1	90316783	90316901	+	intron-Distal	4.42553	11.75759	K562	TARDBP
chr1	90345191	90345224	+	intron-Distal	3.24630	6.57673	K562	KHSRP
chr1	90304044	90304137	+	intron-Distal	3.24023	3.62826	K562	HNRNPL
chr1	90309353	90309401	+	intron-Proximal	3.93616	6.32385	HepG2	NKRF
chr1	90309109	90309183	+	5'-UTR,intron-Proximal	4.00630	11.07186	HepG2	SF3B4
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

eCLIP assay for RP11-302M6.4 is not avaliable on ENCORE database.

Summary
AS Affected by

Diffrential Expression

The Knockdown/knockout assay for RP11-302M6.4 is not available on ENCORE database.
No RBPs affect the gene expression of RP11-302M6.4 on ENCORE database.

The Knockdown/knockout RNA-Seq assay for RP11-302M6.4 is not available on ENCORE database.

No RBPs affect the gene expression of RP11-302M6.4 on ENCORE database.

The Knockdown/knockout RNA-Seq assay for RP11-302M6.4 is not available on ENCORE database.

4 RBPs can affect the splicing of RP11-302M6.4 :

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
SE	RP11-302M6.4	ENSG00000271949.1	chr1	+	90395366	90395437	90309196	90309341	90398625	90398809	-0.19900	0.00010	0.05397	excluded	K562	SMNDC1
SE	RP11-302M6.4	ENSG00000271949.1	chr1	+	90395366	90395437	90309196	90309341	90398625	90398809	-0.17900	0.00626	0.09020	excluded	HepG2	U2AF1
SE	RP11-302M6.4	ENSG00000271949.1	chr1	+	90312075	90312217	90309196	90309341	90398625	90398809	0.13100	0.00003	0.01522	included	K562	PUM1
SE	RP11-302M6.4	ENSG00000271949.1	chr1	+	90312075	90312217	90309196	90309341	90398625	90398809	-0.28600	0.00017	0.03428	excluded	HepG2	HNRNPA1

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

RP11-302M6.4

General Information

Functions

Localization

Domains (AlphaFold: RP11-302M6.4)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for RP11-302M6.4 is not avaliable on ENCORE database.

43 proteins are bound to RP11-302M6.4 RNA:

eCLIP assay for RP11-302M6.4 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for RP11-302M6.4 is not available on ENCORE database.

No RBPs affect the gene expression of RP11-302M6.4 on ENCORE database.

The Knockdown/knockout RNA-Seq assay for RP11-302M6.4 is not available on ENCORE database.

4 RBPs can affect the splicing of RP11-302M6.4 :

The Knockdown/knockout RNA-Seq assay for RP11-302M6.4 is not avaliable on ENCORE database.