APOO

General Information

Gene Name : APOO
Gene ID : ENSG00000184831.13
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: APOO)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	APOO	ENSG00000184831.13	22.97	20.44	21.70	ENCSR000AEF
HepG2	APOO	ENSG00000184831.13	9.20	17.95	13.57	ENCSR985KAT
K562	APOO	ENSG00000184831.13	45.46	48.46	46.96	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for APOO is not avaliable on ENCORE database.

Proteins bound to RNA

APOO RNA is bound by 4 proteins.

CanvasJS.com

eCLIP assay for APOO is not avaliable on ENCORE database.

4 proteins are bound to APOO RNA:

Show entries

Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chrX	23925911	23926030	-	5'-UTR,intron-Distal,intron-Proximal	4.15097	8.67207	K562	DDX3X
chrX	23851518	23851611	-	3'-UTR,intron-Distal	4.75846	6.91022	K562	IGF2BP1
chrX	23880822	23880968	-	intron-Distal	4.88233	6.13169	K562	ILF3
chrX	23925828	23925900	-	5'-UTR,intron-Distal	3.84436	3.39858	K562	IGF2BP2
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 4 of 4 entries

eCLIP assay for APOO is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for APOO is not available on ENCORE database.
38 RBPs can affect the levels of APOO.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for APOO is not available on ENCORE database.

38 RBPs can affect the gene expression of APOO :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
APOO	ENSG00000184831.9	375.11280	112.54500	1.73670	15.34900	14.20000	HepG2	AKAP1
APOO	ENSG00000184831.9	194.78430	457.56330	-1.23210	13.64030	12.40060	K562	HNRNPC
APOO	ENSG00000184831.9	382.77260	779.31870	-1.02570	12.28510	11.17580	K562	AQR
APOO	ENSG00000184831.9	230.80060	476.25090	-1.04510	9.45520	7.92710	K562	PCBP3
APOO	ENSG00000184831.9	196.44250	365.30900	-0.89500	7.62070	6.31580	K562	POLR2G
APOO	ENSG00000184831.9	363.16790	571.46870	-0.65400	7.03610	5.77960	K562	SF3A3
APOO	ENSG00000184831.9	609.75420	877.94460	-0.52590	4.94770	3.73990	K562	ZC3H8
APOO	ENSG00000184831.9	445.95190	614.07230	-0.46150	4.45340	3.56410	K562	UPF1
APOO	ENSG00000184831.9	172.31170	95.92820	0.84490	3.67180	3.14620	HepG2	SRSF1
APOO	ENSG00000184831.9	260.60650	378.39780	-0.53800	3.76380	2.76210	K562	SF3B4
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 41 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for APOO is not available on ENCORE database.

13 RBPs can affect the splicing of APOO :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	2ndExonStart	2ndExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
SE	APOO	ENSG00000184831.9	chrX	-	23874418	23874499			23858429	23858494	23876758	23876850	-0.22500	0.00000	0.00003	excluded	K562	SF3B4
A3SS	APOO	ENSG00000184831.9	chrX	-	23897031	23897194			23897031	23897151	23898961	23899087	0.06800	0.00000	0.00001	longer	K562	AQR
A3SS	APOO	ENSG00000184831.9	chrX	-	23898961	23899098			23898961	23899069	23925810	23926057	0.11600	0.00000	0.00000	longer	K562	AQR
MXE	APOO	ENSG00000184831.9	chrX	-	23876758	23876850	23886709	23886805	23858429	23858494	23892519	23892574	-0.28700	0.00000	0.00024	2included	K562	SF3B4
SE	APOO	ENSG00000184831.9	chrX	-	23874418	23874499			23858429	23858494	23876758	23876850	-0.15000	0.00009	0.00253	excluded	K562	U2AF2
SE	APOO	ENSG00000184831.9	chrX	-	23874418	23874499			23858429	23858494	23876758	23876850	0.11800	0.00010	0.02871	included	K562	HNRNPA1
A3SS	APOO	ENSG00000184831.9	chrX	-	23858429	23858651			23858429	23858494	23874418	23874499	0.05100	0.00011	0.00097	longer	K562	AQR
MXE	APOO	ENSG00000184831.9	chrX	-	23876758	23876850	23892519	23892574	23858429	23858494	23897031	23897151	0.13000	0.00015	0.03717	1included	K562	HNRNPA1
SE	APOO	ENSG00000184831.9	chrX	-	23863776	23863913			23858429	23858494	23874418	23874499	-0.12200	0.00018	0.01630	excluded	HepG2	AKAP1
SE	APOO	ENSG00000184831.9	chrX	-	23874418	23874499			23858429	23858494	23876758	23876850	-0.09700	0.00034	0.00688	excluded	K562	PUS1

Showing 1 to 10 of 22 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

APOO

General Information

Functions

Localization

Domains (AlphaFold: APOO)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for APOO is not avaliable on ENCORE database.

4 proteins are bound to APOO RNA:

eCLIP assay for APOO is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for APOO is not available on ENCORE database.

38 RBPs can affect the gene expression of APOO :

The Knockdown/knockout RNA-Seq assay for APOO is not available on ENCORE database.

13 RBPs can affect the splicing of APOO :

The Knockdown/knockout RNA-Seq assay for APOO is not avaliable on ENCORE database.