AP003900.6

General Information

Gene Name : AP003900.6
Gene ID :
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: AP003900.6)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for AP003900.6 is not avaliable on ENCORE database.

Proteins bound to RNA

AP003900.6 RNA is bound by 9 proteins.

eCLIP assay for AP003900.6 is not avaliable on ENCORE database.

9 proteins are bound to AP003900.6 RNA:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr21	11182903	11182946	+	intron-Distal	3.03443	4.31055	K562	SAFB2
chr21	11173100	11173130	+	intron-Distal	3.06753	5.69888	K562	EXOSC5
chr21	11174398	11174473	+	intron-Distal	3.82459	14.55196	K562	EXOSC5
chr21	11174982	11175037	+	intron-Distal	3.96535	6.30745	K562	HNRNPM
chr21	11174287	11174384	+	intron-Distal	4.65569	10.70984	K562	HNRNPM
chr21	11174419	11174477	+	intron-Distal	3.69065	7.07620	K562	HNRNPM
chr21	11173993	11174087	+	intron-Distal,intron-Proximal	4.56216	5.99692	K562	HNRNPM
chr21	11174558	11174632	+	intron-Distal	6.39918	50.03955	K562	LIN28B
chr21	11181430	11181492	+	intron-Distal	3.88968	4.90350	K562	XRCC6
chr21	11174675	11174739	+	intron-Distal	3.67261	15.28519	K562	EXOSC5
chr21	11174533	11174558	+	intron-Distal	3.90893	7.52193	K562	LIN28B
chr21	11175283	11175395	+	intron-Distal	4.08303	19.38386	K562	KHSRP
chr21	11175332	11175376	+	intron-Distal	5.56845	9.68086	K562	EXOSC5
chr21	11174081	11174128	+	intron-Distal,intron-Proximal	5.60784	11.00067	K562	EXOSC5
chr21	11174955	11175140	+	intron-Distal	3.71857	30.10433	K562	EXOSC5
chr21	11173237	11173327	+	intron-Distal	4.21441	3.53404	K562	HNRNPM
chr21	11175320	11175399	+	intron-Distal	3.69014	3.34442	K562	FUS
chr21	11175042	11175104	+	intron-Distal	3.96388	5.58732	K562	HNRNPM
chr21	11173950	11173977	+	intron-Distal	3.78329	5.50914	K562	EXOSC5
chr21	11180216	11180329	+	intron-Distal	5.08653	9.55090	K562	HNRNPL
chr21	11174098	11174150	+	intron-Distal,intron-Proximal	4.26658	4.80898	K562	HNRNPM
chr21	11174149	11174185	+	intron-Distal	5.02189	14.16920	K562	EXOSC5
chr21	11183288	11183336	+	intron-Distal,intron-Proximal	3.92425	10.74151	K562	SAFB2
chr21	11174324	11174398	+	intron-Distal	3.26057	20.74019	K562	EXOSC5
chr21	11177233	11177303	+	intron-Distal	4.24916	4.33299	K562	ILF3
chr21	11174384	11174419	+	intron-Distal	3.82561	3.34940	K562	HNRNPM
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

eCLIP assay for AP003900.6 is not avaliable on ENCORE database.

Summary
DE Affected by

Diffrential Expression

The Knockdown/knockout assay for AP003900.6 is not available on ENCORE database.
12 RBPs can affect the levels of AP003900.6.

The Knockdown/knockout RNA-Seq assay for AP003900.6 is not available on ENCORE database.

12 RBPs can affect the gene expression of AP003900.6 :

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
AP003900.6	ENSG00000271308.1	12.52160	49.52790	-1.98380	4.46880	3.77770	K562	AGGF1
AP003900.6	ENSG00000271308.1	18.40630	54.41580	-1.56380	3.98590	2.76210	K562	AKAP8
AP003900.6	ENSG00000271308.1	15.77110	51.53410	-1.70820	4.03220	3.24170	K562	AKAP8L
AP003900.6	ENSG00000271308.1	12.57200	54.06800	-2.10460	5.77560	4.39840	K562	ATP5C1
AP003900.6	ENSG00000271308.1	27.70190	55.46660	-1.00160	2.27570	1.49210	K562	DKC1
AP003900.6	ENSG00000271308.1	16.11870	54.69740	-1.76270	4.55590	3.45540	K562	KIF1C
AP003900.6	ENSG00000271308.1	14.57470	52.35330	-1.84480	3.66350	2.36850	K562	MAK16
AP003900.6	ENSG00000271308.1	12.13200	61.27390	-2.33650	6.77490	5.23200	K562	MBNL1
AP003900.6	ENSG00000271308.1	11.61860	42.94800	-1.88610	3.15830	2.20450	K562	NAA15
AP003900.6	ENSG00000271308.1	8.39970	51.12160	-2.60550	5.59460	4.85430	K562	PUS1
AP003900.6	ENSG00000271308.1	8.09880	49.79880	-2.62030	6.35140	5.47880	K562	RBM15
AP003900.6	ENSG00000271308.1	17.19870	51.81790	-1.59120	3.01640	1.64540	K562	UTP18
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

AP003900.6

General Information

Functions

Localization

Domains (AlphaFold: AP003900.6)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for AP003900.6 is not avaliable on ENCORE database.

9 proteins are bound to AP003900.6 RNA:

eCLIP assay for AP003900.6 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for AP003900.6 is not available on ENCORE database.

12 RBPs can affect the gene expression of AP003900.6 :

The Knockdown/knockout RNA-Seq assay for AP003900.6 is not available on ENCORE database.

No RBPs affect the alternative splcing events of AP003900.6 on ENCORE database.

The Knockdown/knockout RNA-Seq assay for AP003900.6 is not avaliable on ENCORE database.