AATK-AS1

General Information

Gene Name       : AATK-AS1
Gene ID             :
Essential Gene : No

Functions

Localization

Domains (AlphaFold: AATK-AS1)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for AATK-AS1 is not avaliable on ENCORE database.



Proteins bound to RNA
  • AATK-AS1 RNA is bound by 12 proteins.  







eCLIP assay for AATK-AS1 is not avaliable on ENCORE database.





12 proteins are bound to AATK-AS1 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr177914085079140891+intron-Distal3.244485.45050HepG2CSTF2T
chr177914032079140483+intron-Distal,intron-Proximal5.6681412.38643HepG2PRPF4
chr177914011079140150+intron-Distal3.727445.44474HepG2FAM120A
chr177914037179140457+intron-Distal,intron-Proximal4.2676411.34123HepG2NKRF
chr177914031079140348+intron-Distal4.756896.62861HepG2FAM120A
chr177913984079139907+intron-Distal3.440285.91358HepG2FAM120A
chr177914086279140904+intron-Distal4.610214.02776HepG2FAM120A
chr177914037079140481+intron-Distal,intron-Proximal3.944713.08177HepG2HNRNPUL1
chr177914170679141784+intron-Distal3.305576.04271HepG2CSTF2T
chr177914079579140831+intron-Distal4.059523.71028HepG2NKRF
chr177914037679140439+intron-Distal,intron-Proximal3.824165.26540HepG2GTF2F1
chr177914034679140450+intron-Distal,intron-Proximal4.906336.62122HepG2RBFOX2
chr177914018779140275+intron-Distal6.0853315.62361HepG2FAM120A
chr177914034879140475+intron-Distal,intron-Proximal6.0631835.81520HepG2FAM120A
chr177914113579141278+intron-Distal3.919475.29549HepG2HNRNPL
chr177914035879140492+intron-Distal,intron-Proximal3.8025911.50781HepG2CSTF2T
chr177914036179140464+intron-Distal,intron-Proximal3.171614.73617HepG2DROSHA
chr177913982179139928+intron-Distal3.643483.72699HepG2PRPF4
chr177914380879144005+intron-Distal5.6916711.29390HepG2DKC1
chr177913977379139874+intron-Distal3.8460312.05819HepG2CSTF2T
chr177914037179140463+intron-Distal,intron-Proximal3.344853.40525HepG2AGGF1
chr177914039479140465+intron-Proximal3.682753.29596HepG2XRN2
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for AATK-AS1 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for AATK-AS1 is not available on ENCORE database.

  • 2 RBPs can affect the levels of AATK-AS1.  








The Knockdown/knockout RNA-Seq assay for AATK-AS1 is not available on ENCORE database.





2 RBPs can affect the gene expression of AATK-AS1 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
AATK-AS1ENSG00000225180.215.548001.353303.522002.709502.07430HepG2GPKOW
AATK-AS1ENSG00000225180.224.278403.255902.898502.920702.31100HepG2PUF60
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for AATK-AS1 is not available on ENCORE database.






No RBPs affect the alternative splcing events of AATK-AS1 on ENCORE database.





The Knockdown/knockout RNA-Seq assay for AATK-AS1 is not avaliable on ENCORE database.