XXbac-BPG308K3.5

General Information

Gene Name : XXbac-BPG308K3.5
Gene ID :
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: XXbac-BPG308K3.5)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for XXbac-BPG308K3.5 is not avaliable on ENCORE database.

Proteins bound to RNA

XXbac-BPG308K3.5 RNA is bound by 3 proteins.

eCLIP assay for XXbac-BPG308K3.5 is not avaliable on ENCORE database.

3 proteins are bound to XXbac-BPG308K3.5 RNA:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr6	28806236	28806241	-	intron-Distal	8.66112	400.00000	K562	NSUN2
chr6	28806213	28806283	-	intron-Distal	4.26742	9.31611	HepG2	XPO5
chr6	28806232	28806236	-	intron-Distal	8.84533	400.00000	K562	NSUN2
chr6	28806248	28806259	-	intron-Distal	4.24514	9.28343	K562	HNRNPM
chr6	28806212	28806248	-	intron-Distal	4.17788	12.99584	K562	HNRNPM
chr6	28806224	28806232	-	intron-Distal	9.03235	400.00000	K562	NSUN2
chr6	28806210	28806224	-	intron-Distal	9.03126	400.00000	K562	NSUN2
chr6	28806241	28806245	-	intron-Distal	8.81224	400.00000	K562	NSUN2
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

eCLIP assay for XXbac-BPG308K3.5 is not avaliable on ENCORE database.

Summary
DE Affected by

Diffrential Expression

The Knockdown/knockout assay for XXbac-BPG308K3.5 is not available on ENCORE database.
3 RBPs can affect the levels of XXbac-BPG308K3.5.

The Knockdown/knockout RNA-Seq assay for XXbac-BPG308K3.5 is not available on ENCORE database.

3 RBPs can affect the gene expression of XXbac-BPG308K3.5 :

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
XXbac-BPG308K3.5	ENSG00000225173.1	14.36270	0.00000	99999.99990	3.38980	2.80920	HepG2	AKAP1
XXbac-BPG308K3.5	ENSG00000225173.1	63.79750	18.64880	1.77430	4.02880	3.11970	K562	GRSF1
XXbac-BPG308K3.5	ENSG00000225173.1	71.76870	33.06460	1.11800	2.84300	1.87020	K562	PUM2
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

XXbac-BPG308K3.5

General Information

Functions

Localization

Domains (AlphaFold: XXbac-BPG308K3.5)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for XXbac-BPG308K3.5 is not avaliable on ENCORE database.

3 proteins are bound to XXbac-BPG308K3.5 RNA:

eCLIP assay for XXbac-BPG308K3.5 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for XXbac-BPG308K3.5 is not available on ENCORE database.

3 RBPs can affect the gene expression of XXbac-BPG308K3.5 :

The Knockdown/knockout RNA-Seq assay for XXbac-BPG308K3.5 is not available on ENCORE database.

No RBPs affect the alternative splcing events of XXbac-BPG308K3.5 on ENCORE database.

The Knockdown/knockout RNA-Seq assay for XXbac-BPG308K3.5 is not avaliable on ENCORE database.