RP11-99J16__A.2

General Information

Gene Name       : RP11-99J16__A.2
Gene ID             :
Essential Gene : No

Functions

Localization

Domains (AlphaFold: RP11-99J16__A.2)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for RP11-99J16__A.2 is not avaliable on ENCORE database.



Proteins bound to RNA
  • RP11-99J16__A.2 RNA is bound by 13 proteins.  







eCLIP assay for RP11-99J16__A.2 is not avaliable on ENCORE database.





13 proteins are bound to RP11-99J16__A.2 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr1230849830230849836-5'-UTR,intron-Distal3.4035238.63023HepG2DDX3X
chr1230849906230850012-5'-UTR,intron-Distal3.026014.63453HepG2ZNF800
chr1230846517230846523-CDS,intron-Distal5.63676400.00000HepG2RPS3
chr1230846535230846577-CDS,intron-Distal3.76136400.00000HepG2DDX3X
chr1230846533230846576-CDS,intron-Distal5.19817400.00000HepG2RPS3
chr1230849826230849832-intron-Distal5.1129723.89461HepG2AQR
chr1230846477230846535-CDS,intron-Distal4.05480400.00000HepG2DDX3X
chr1230848799230848871-intron-Distal4.227674.36190HepG2TAF15
chr1230846568230846633-5'-UTR,CDS,intron-Distal,intron-Proximal4.1222511.09624HepG2AQR
chr1230849814230849826-intron-Distal5.6309923.26203HepG2AQR
chr1230846491230846517-CDS,intron-Distal5.95744400.00000HepG2RPS3
chr1230849898230849952-5'-UTR,intron-Distal3.0548819.33229HepG2DDX3X
chr1230846487230846585-CDS,intron-Distal3.4199475.37427HepG2NOL12
chr1230846407230846464-CDS,intron-Distal,intron-Proximal5.10121400.00000HepG2RPS3
chr1230849954230850023-5'-UTR,intron-Distal4.2971818.18832HepG2RPS3
chr1230846428230846455-CDS,intron-Distal,intron-Proximal3.4342924.60446HepG2SDAD1
chr1230846508230846535-CDS,intron-Distal3.1793873.38233HepG2SND1
chr1230846506230846559-CDS,intron-Distal3.314703.90373HepG2AQR
chr1230849223230849324-intron-Distal3.455774.33990HepG2QKI
chr1230849816230849829-intron-Distal3.514526.61645HepG2BUD13
chr1230849792230849814-intron-Distal5.5940522.89982HepG2AQR
chr1230849791230849816-intron-Distal3.811117.62584HepG2BUD13
chr1230849899230849954-5'-UTR,intron-Distal3.9590224.65527HepG2RPS3
chr1230846465230846508-CDS,intron-Distal3.3533762.50472HepG2SND1
chr1230849960230850004-5'-UTR,intron-Distal4.4206844.73459HepG2DDX3X
chr1230846480230846491-CDS,intron-Distal5.78755400.00000HepG2RPS3
chr1230846582230846588-CDS,intron-Distal3.9596061.82114HepG2RPS3
chr1230849836230849893-5'-UTR,intron-Distal3.6202880.85010HepG2DDX3X
chr1230849830230849893-5'-UTR,intron-Distal3.8697259.03222HepG2RPS3
chr1230846467230846480-CDS,intron-Distal5.31942400.00000HepG2RPS3
chr1230846469230846600-5'-UTR,CDS,intron-Distal,intron-Proximal3.2085261.16687HepG2PCBP1
chr1230849787230849825-intron-Distal3.3596313.27450HepG2PRPF8
chr1230846320230846364-CDS,intron-Distal,intron-Proximal5.35285400.00000HepG2RPS3
chr1230846523230846533-CDS,intron-Distal5.48935400.00000HepG2RPS3
chr1230846577230846599-5'-UTR,CDS,intron-Distal3.58655400.00000HepG2DDX3X
chr1230849831230849893-5'-UTR,intron-Distal3.1262710.26328HepG2NIP7
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for RP11-99J16__A.2 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for RP11-99J16__A.2 is not available on ENCORE database.

  • No RBPs affect the gene expression of RP11-99J16__A.2 on ENCORE database.


The Knockdown/knockout RNA-Seq assay for RP11-99J16__A.2 is not available on ENCORE database.






No RBPs affect the gene expression of RP11-99J16__A.2 on ENCORE database.






The Knockdown/knockout RNA-Seq assay for RP11-99J16__A.2 is not available on ENCORE database.






No RBPs affect the alternative splcing events of RP11-99J16__A.2 on ENCORE database.





The Knockdown/knockout RNA-Seq assay for RP11-99J16__A.2 is not avaliable on ENCORE database.