NCAM1

General Information

Gene Name       : NCAM1
Gene ID             : ENSG00000149294.16
Essential Gene : No

Functions

Localization

Domains (AlphaFold: NCAM1)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878NCAM1ENSG00000149294.160.010.000.01ENCSR000AEF
HepG2NCAM1ENSG00000149294.160.150.020.08ENCSR985KAT
K562NCAM1ENSG00000149294.160.000.000.00ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for NCAM1 is not avaliable on ENCORE database.



Proteins bound to RNA
  • NCAM1 RNA is bound by 1 proteins.  







eCLIP assay for NCAM1 is not avaliable on ENCORE database.





1 proteins are bound to NCAM1 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr11113000614113000623+intron-Distal6.5807323.58287K562NSUN2
chr11113000623113000630+intron-Distal6.5807323.58287K562NSUN2
chr11113000608113000614+intron-Distal6.5807323.58287K562NSUN2
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for NCAM1 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for NCAM1 is not available on ENCORE database.

  • 5 RBPs can affect the levels of NCAM1.  








The Knockdown/knockout RNA-Seq assay for NCAM1 is not available on ENCORE database.





5 RBPs can affect the gene expression of NCAM1 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
NCAM1ENSG00000149294.1213.939101.208503.527702.192601.71280HepG2AKAP1
NCAM1ENSG00000149294.1216.150201.245103.697103.262902.52190HepG2CPSF6
NCAM1ENSG00000149294.1214.245001.072303.731602.553801.94520HepG2MATR3
NCAM1ENSG00000149294.1220.177503.691802.450302.593802.08790HepG2RBM22
NCAM1ENSG00000149294.1219.727200.0000099999.999904.349502.56130HepG2SF1
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for NCAM1 is not available on ENCORE database.






No RBPs affect the alternative splcing events of NCAM1 on ENCORE database.





The Knockdown/knockout RNA-Seq assay for NCAM1 is not avaliable on ENCORE database.