CTD-2008L17.1

General Information

Gene Name       : CTD-2008L17.1
Gene ID             :
Essential Gene : No

Functions

Localization

Domains (AlphaFold: CTD-2008L17.1)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for CTD-2008L17.1 is not avaliable on ENCORE database.



Proteins bound to RNA
  • CTD-2008L17.1 RNA is bound by 4 proteins.  







eCLIP assay for CTD-2008L17.1 is not avaliable on ENCORE database.





4 proteins are bound to CTD-2008L17.1 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr185368734053687411+intron-Distal4.024604.67922K562PTBP1
chr185368748453687583+intron-Distal5.6228010.46904K562PTBP1
chr185361144453611554+intron-Distal3.252834.52210K562KHSRP
chr185360571353605754+intron-Distal3.796763.97268K562PTBP1
chr185368084153680918+intron-Distal4.814055.44433K562EXOSC5
chr185364004153640198+intron-Distal4.137624.18579K562MATR3
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for CTD-2008L17.1 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for CTD-2008L17.1 is not available on ENCORE database.

  • No RBPs affect the gene expression of CTD-2008L17.1 on ENCORE database.


The Knockdown/knockout RNA-Seq assay for CTD-2008L17.1 is not available on ENCORE database.






No RBPs affect the gene expression of CTD-2008L17.1 on ENCORE database.






The Knockdown/knockout RNA-Seq assay for CTD-2008L17.1 is not available on ENCORE database.






No RBPs affect the alternative splcing events of CTD-2008L17.1 on ENCORE database.





The Knockdown/knockout RNA-Seq assay for CTD-2008L17.1 is not avaliable on ENCORE database.