CMC4

General Information

Gene Name       : CMC4
Gene ID             : ENSG00000182712.15
Essential Gene : No

Functions

Localization

Domains (AlphaFold: CMC4)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878CMC4ENSG00000182712.157.789.928.85ENCSR000AEF
HepG2CMC4ENSG00000182712.155.633.854.74ENCSR985KAT
K562CMC4ENSG00000182712.159.988.329.15ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for CMC4 is not avaliable on ENCORE database.



Proteins bound to RNA
  • CMC4 RNA is bound by 1 proteins.  







eCLIP assay for CMC4 is not avaliable on ENCORE database.





1 proteins are bound to CMC4 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chrX154290031154290088-3'-UTR,intron-Distal4.124144.12025K562YBX3
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for CMC4 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for CMC4 is not available on ENCORE database.

  • 47 RBPs can affect the levels of CMC4.  








The Knockdown/knockout RNA-Seq assay for CMC4 is not available on ENCORE database.





47 RBPs can affect the gene expression of CMC4 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
CMC4ENSG00000182712.1170.82230131.72520-0.895302.899601.90150HepG2CCAR1
CMC4ENSG00000182712.1158.1045094.15260-0.696402.079801.49130HepG2CKAP4
CMC4ENSG00000182712.11194.30670124.175700.645901.983901.44540HepG2DDX3X
CMC4ENSG00000182712.11118.1694060.954900.954903.617602.69380HepG2EIF4G2
CMC4ENSG00000182712.1152.78930106.07230-1.006702.508401.87290HepG2G3BP1
CMC4ENSG00000182712.1190.1351048.991100.879502.234501.64930HepG2HNRNPA1
CMC4ENSG00000182712.11136.4001071.570200.930303.410202.71980HepG2HNRNPLL
CMC4ENSG00000182712.11143.6825054.126601.408408.240807.23580HepG2HNRNPU
CMC4ENSG00000182712.1187.5137050.638600.789201.967901.34920HepG2IGF2BP1
CMC4ENSG00000182712.1182.2348039.408201.061202.972701.73060HepG2KHDRBS1
CMC4ENSG00000182712.1140.02090115.06530-1.523604.663303.86120HepG2MATR3
CMC4ENSG00000182712.1124.4504082.13980-1.748203.404402.24090HepG2METAP2
CMC4ENSG00000182712.11145.3844080.751400.848202.968402.13120HepG2MSI2
CMC4ENSG00000182712.1199.5746037.773801.398304.254203.13780HepG2PABPC1
CMC4ENSG00000182712.1135.5590092.82140-1.384204.744003.41020HepG2PCBP2
CMC4ENSG00000182712.1186.3725048.277900.839102.492101.78870HepG2PPIL4
CMC4ENSG00000182712.1148.47630117.89340-1.282104.202903.55950HepG2PTBP1
CMC4ENSG00000182712.1125.6940077.94720-1.601105.220504.56470HepG2RBM22
CMC4ENSG00000182712.1167.09440115.85690-0.788102.357101.72930HepG2RBM25
CMC4ENSG00000182712.1182.2382039.102401.072502.968501.61260HepG2SART3
CMC4ENSG00000182712.11118.1741058.545001.013204.474303.61480HepG2SLBP
CMC4ENSG00000182712.1143.20950128.09390-1.567803.888503.35160HepG2SRSF1
CMC4ENSG00000182712.1130.6904060.28080-0.973902.066101.51550HepG2SRSF5
CMC4ENSG00000182712.1138.16190104.22360-1.449505.145704.43510HepG2SRSF9
CMC4ENSG00000182712.1189.2490036.136501.304304.676103.20990HepG2STIP1
CMC4ENSG00000182712.11123.9972067.371700.880003.143002.14690HepG2SUPT6H
CMC4ENSG00000182712.1178.5565043.438400.854702.103001.50270HepG2SUPV3L1
CMC4ENSG00000182712.11158.0615085.375800.888502.163001.60110HepG2U2AF1
CMC4ENSG00000182712.11115.0122046.247501.314202.617601.65950HepG2U2AF2
CMC4ENSG00000182712.11112.6312037.196801.598307.046005.30200HepG2XPO5
CMC4ENSG00000182712.1141.6736088.10850-1.080102.632701.40780HepG2XRCC5
CMC4ENSG00000182712.1198.5903042.760001.205104.049603.18050HepG2XRN2
CMC4ENSG00000182712.11131.7801076.359700.787102.637401.48970K562AARS
CMC4ENSG00000182712.11219.55020143.280600.615603.278902.18560K562AKAP8
CMC4ENSG00000182712.1179.50480158.05630-0.991301.894301.39140K562AQR
CMC4ENSG00000182712.1178.9252041.911700.913002.389001.43570K562EIF3D
CMC4ENSG00000182712.1155.7062092.35390-0.729301.946701.42150K562FXR1
CMC4ENSG00000182712.11194.29110116.572300.736903.752902.71040K562HNRNPU
CMC4ENSG00000182712.11237.28980143.946400.721002.654801.84860K562KIF1C
CMC4ENSG00000182712.11220.41980137.810500.677503.677602.37750K562MAK16
CMC4ENSG00000182712.1155.6133095.07620-0.773702.394301.54200K562MATR3
CMC4ENSG00000182712.1171.15120141.76060-0.994504.407203.40710K562MTPAP
CMC4ENSG00000182712.11150.5808075.817600.989802.702001.72630K562PABPN1
CMC4ENSG00000182712.1138.6422084.76270-1.133303.359402.28280K562PCBP2
CMC4ENSG00000182712.11168.94460103.147700.711702.985202.12810K562PPIG
CMC4ENSG00000182712.11179.8643090.120100.996902.877301.39240K562PPP1R8
CMC4ENSG00000182712.11201.36160131.079700.619203.113902.49040K562RBM15
CMC4ENSG00000182712.1174.1340038.794500.934202.251701.51860K562RPS19
CMC4ENSG00000182712.11103.94390155.41410-0.580302.348301.59130K562SF3A3
CMC4ENSG00000182712.1193.16480142.91820-0.617302.249401.46180K562WDR3
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for CMC4 is not available on ENCORE database.





3 RBPs can affect the splicing of CMC4 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SECMC4ENSG00000182712.11chrX-1542938931542940641542922401542923081542989681542996370.407000.000020.00093includedK562SRSF1
SECMC4ENSG00000182712.11chrX-154294180154294332154293893154294064154298968154299637-0.541000.000360.00904excludedK562SRSF1
SECMC4ENSG00000182712.11chrX-1542937601542938121542922401542923081542989681542996370.296000.002750.02854includedK562AQR
SECMC4ENSG00000182712.11chrX-1542938931542940641542922401542923081542989681542996370.380000.002100.06988includedK562PTBP1

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for CMC4 is not avaliable on ENCORE database.