RBM19

General Information

Gene Name : RBM19
Gene ID : ENSG00000122965.10
Essential Gene : Yes

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: RBM19)

Not Available

Antibody Validation

Thermo Fisher: PA5-58567

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	RBM19	ENSG00000122965.10	12.90	18.47	15.68	ENCSR000AEF
HepG2	RBM19	ENSG00000122965.10	28.52	22.80	25.66	ENCSR985KAT
K562	RBM19	ENSG00000122965.10	27.38	25.51	26.45	ENCSR000AEO

Assays

2 Released experiments are available on ENCORE database.

Assay Type	Exp_Name	ENCODE ID	Target label	Biosample	Status	Linked Antibody	Controls	Method	Note
knockdown followed by RNA-seq	RBM19-BGKcLV19-K562	ENCSR129AAZ	RBM19	K562	Released		ENCSR978MMZ	CRISPR	KD% = 62.4,65.7095474
knockdown followed by RNA-seq	RBM19-BGHcLV20-HepG2	ENCSR532IHF	RBM19	HepG2	Released		ENCSR306EWE	CRISPR	KD% = 96.6,98.6

eCLIP

No eCLIP experiment available

Antibody Validation

GeneName	Antibody_DCC_ID	Product_ID	Lot_ID	Phosphate	HepG2 Primary Validation	K562 Primary Validation	HepG2 Secondary Validation	K562 Secondary Validation
RBM19	ENCAB385QQI	PA5-58567	UC2743817				BGHcLV20-25, Released, ENCODE4	BGKcLV19-37, Released, ENCODE4

KD RNA-Seq

GeneName	Cell_Line	Method	Exp_ID	Control_ID	Sample_reps	Control_reps	KD%	Status	Project	Note
RBM19	K562	CRISPR	ENCSR129AAZ	ENCSR978MMZ	RBM19-BGKcLV19-37,RBM19-BGKcLV19-38	NT-BGKcLV19-1,NT-BGKcLV19-2	62.4,65.7095474	Released	ENCODE4
RBM19	HepG2	CRISPR	ENCSR532IHF	ENCSR306EWE	RBM19-BGHcLV20-25,RBM19-BGHcLV20-26	NT-BGHcLV20-1,NT-BGHcLV20-2	96.6,98.6	Released	ENCODE4

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela
RBM19	Product_ID: PA5-58567 Lot_ID: UC2743817 Source: Thermo Fisher Target Name: RBM19-human

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for RBM19 is not avaliable on ENCORE database.

Proteins bound to RNA

RBM19 RNA is bound by 21 proteins.

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eCLIP assay for RBM19 is not avaliable on ENCORE database.

21 proteins are bound to RBM19 RNA:

Show entries

Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr12	114260956	114261007	-	3'-UTR,intron-Distal,intron-Proximal	6.16091	38.40377	K562	AQR
chr12	114261007	114261015	-	3'-UTR,intron-Distal,intron-Proximal	7.48872	36.29454	K562	AQR
chr12	114260962	114261006	-	3'-UTR,intron-Distal,intron-Proximal	3.76406	24.00618	HepG2	PRPF8
chr12	114260973	114261007	-	3'-UTR,intron-Distal,intron-Proximal	4.95465	21.07622	HepG2	AQR
chr12	114255946	114256023	-	3'-UTR,intron-Distal,intron-Proximal	3.62882	19.86915	K562	AQR
chr12	114261007	114261014	-	3'-UTR,intron-Distal,intron-Proximal	4.80265	18.63046	HepG2	AQR
chr12	114261006	114261015	-	3'-UTR,intron-Distal,intron-Proximal	3.37763	18.22040	HepG2	PRPF8
chr12	114397126	114397187	-	CDS,intron-Distal	3.58057	15.63865	HepG2	PPIG
chr12	114397495	114397637	-	intron-Distal,intron-Proximal	5.41276	15.39065	K562	AQR
chr12	114342936	114342979	-	intron-Distal	5.12013	15.11129	HepG2	HNRNPM
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 95 entries

eCLIP assay for RBM19 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for RBM19 is not available on ENCORE database.
70 RBPs can affect the levels of RBM19.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for RBM19 is not available on ENCORE database.

70 RBPs can affect the gene expression of RBM19 :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
RBM19	ENSG00000122965.6	1291.76010	643.06940	1.00620	24.17900	22.50820	K562	FXR1
RBM19	ENSG00000122965.6	1290.49410	598.82880	1.10760	23.91120	22.03670	K562	PTBP1
RBM19	ENSG00000122965.6	1311.08220	616.32680	1.08890	21.81720	19.28080	K562	MAGOH
RBM19	ENSG00000122965.6	555.69210	1149.02760	-1.04810	13.40850	12.09990	HepG2	GPKOW
RBM19	ENSG00000122965.6	976.52190	1461.55620	-0.58180	11.64400	10.73490	HepG2	SSB
RBM19	ENSG00000122965.6	1231.32700	1783.27140	-0.53430	10.18060	9.14620	HepG2	ETF1
RBM19	ENSG00000122965.6	1717.16960	1283.19950	0.42020	8.49640	7.57670	HepG2	PUM1
RBM19	ENSG00000122965.6	187.53620	412.52830	-1.13730	8.97600	7.55410	K562	G3BP2
RBM19	ENSG00000122965.6	2256.32390	1683.40900	0.42250	8.11520	7.38180	HepG2	SRFBP1
RBM19	ENSG00000122965.6	2284.41140	1514.94560	0.59250	8.02310	6.95400	HepG2	RPLP0
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 80 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for RBM19 is not available on ENCORE database.

7 RBPs can affect the splicing of RBM19 :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
RI	RBM19	ENSG00000122965.6	chr12	-	114259861	114261126	114259861	114260451	114261013	114261126	-0.49200	0.00005	0.01647	excluded	HepG2	XRCC6
RI	RBM19	ENSG00000122965.6	chr12	-	114259861	114261126	114259861	114260451	114261013	114261126	-0.37300	0.00010	0.00753	excluded	HepG2	AKAP1
SE	RBM19	ENSG00000122965.6	chr12	-	114387887	114387959	114386637	114386841	114390316	114390395	-0.17600	0.00067	0.01925	excluded	HepG2	HNRNPK
A3SS	RBM19	ENSG00000122965.6	chr12	-	114397863	114398091	114397863	114397983	114400036	114400250	0.05300	0.00118	0.00806	longer	K562	AQR
RI	RBM19	ENSG00000122965.6	chr12	-	114259861	114261126	114259861	114260451	114261013	114261126	0.42700	0.00186	0.05655	included	K562	HNRNPUL1
RI	RBM19	ENSG00000122965.6	chr12	-	114259861	114261126	114259861	114260451	114261013	114261126	-0.32800	0.00399	0.04553	excluded	HepG2	PRPF8
RI	RBM19	ENSG00000122965.6	chr12	-	114259861	114261126	114259861	114260451	114261013	114261126	0.29400	0.00646	0.05517	included	HepG2	RBM22

Showing 1 to 7 of 7 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

RBM19

General Information

Functions

Localization

Domains (AlphaFold: RBM19)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for RBM19 is not avaliable on ENCORE database.

21 proteins are bound to RBM19 RNA:

eCLIP assay for RBM19 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for RBM19 is not available on ENCORE database.

70 RBPs can affect the gene expression of RBM19 :

The Knockdown/knockout RNA-Seq assay for RBM19 is not available on ENCORE database.

7 RBPs can affect the splicing of RBM19 :

The Knockdown/knockout RNA-Seq assay for RBM19 is not avaliable on ENCORE database.