RPP38

General Information

Gene Name : RPP38
Gene ID : ENSG00000152464.14
Essential Gene : Yes

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: RPP38)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	RPP38	ENSG00000152464.14	30.90	27.83	29.36	ENCSR000AEF
HepG2	RPP38	ENSG00000152464.14	12.41	16.91	14.66	ENCSR985KAT
K562	RPP38	ENSG00000152464.14	35.09	39.43	37.26	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for RPP38 is not avaliable on ENCORE database.

Proteins bound to RNA

RPP38 RNA is bound by 1 proteins.

CanvasJS.com

eCLIP assay for RPP38 is not avaliable on ENCORE database.

1 proteins are bound to RPP38 RNA:

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Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr10	15145824	15145882	+	CDS,intron-Distal	3.60633	3.02250	K562	YBX3
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 1 of 1 entries

eCLIP assay for RPP38 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for RPP38 is not available on ENCORE database.
33 RBPs can affect the levels of RPP38.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for RPP38 is not available on ENCORE database.

33 RBPs can affect the gene expression of RPP38 :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
RPP38	ENSG00000152464.10	166.30640	319.67970	-0.94280	6.83060	5.93170	K562	HNRNPC
RPP38	ENSG00000152464.10	406.02610	241.54080	0.74920	6.57560	5.69930	K562	FXR1
RPP38	ENSG00000152464.10	395.30520	240.21180	0.71860	6.33240	5.14620	K562	EIF3G
RPP38	ENSG00000152464.10	204.02200	97.33660	1.06760	5.42180	4.18790	HepG2	EIF3D
RPP38	ENSG00000152464.10	603.50770	375.32800	0.68510	5.12640	3.81470	K562	HNRNPM
RPP38	ENSG00000152464.10	253.31750	124.81140	1.02110	4.34380	3.47070	HepG2	RAVER1
RPP38	ENSG00000152464.10	119.88220	197.16170	-0.71780	3.70090	2.90890	HepG2	SLBP
RPP38	ENSG00000152464.10	487.60820	347.63560	0.48800	3.53300	2.60480	K562	SYNCRIP
RPP38	ENSG00000152464.10	348.75350	221.70040	0.65350	3.14030	2.57830	HepG2	AKAP1
RPP38	ENSG00000152464.10	125.31270	205.29440	-0.71220	3.21850	2.34340	HepG2	EIF4G2
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 36 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for RPP38 is not available on ENCORE database.

1 RBPs can affect the splicing of RPP38 :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	2ndExonStart	2ndExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP	Bound by RBP
SE	RPP38	ENSG00000152464.10	chr10	+	15144216	15144335			15139213	15139408	15145303	15146256	0.36700	0.00078	0.02261	included	K562	AGGF1

Showing 1 to 1 of 1 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

RPP38

General Information

Functions

Localization

Domains (AlphaFold: RPP38)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for RPP38 is not avaliable on ENCORE database.

1 proteins are bound to RPP38 RNA:

eCLIP assay for RPP38 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for RPP38 is not available on ENCORE database.

33 RBPs can affect the gene expression of RPP38 :

The Knockdown/knockout RNA-Seq assay for RPP38 is not available on ENCORE database.

1 RBPs can affect the splicing of RPP38 :

The Knockdown/knockout RNA-Seq assay for RPP38 is not avaliable on ENCORE database.