NT5C3A

General Information

Gene Name : NT5C3A
Gene ID : ENSG00000122643.19
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: NT5C3A)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	NT5C3A	ENSG00000122643.19	72.46	59.96	66.21	ENCSR000AEF
HepG2	NT5C3A	ENSG00000122643.19	9.64	22.03	15.84	ENCSR985KAT
K562	NT5C3A	ENSG00000122643.19	30.16	26.93	28.55	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for NT5C3A is not avaliable on ENCORE database.

Proteins bound to RNA

NT5C3A RNA is bound by 11 proteins.

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eCLIP assay for NT5C3A is not avaliable on ENCORE database.

11 proteins are bound to NT5C3A RNA:

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Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr7	33101938	33102146	-	intron-Distal	5.33943	18.74293	HepG2	EFTUD2
chr7	33088578	33088723	-	intron-Distal	4.94058	17.47399	K562	KHSRP
chr7	33063642	33063716	-	3'-UTR,CDS,intron-Distal,intron-Proximal	5.38559	7.49561	HepG2	BCLAF1
chr7	33088723	33088744	-	intron-Distal	4.62213	6.73684	K562	KHSRP
chr7	33066431	33066521	-	3'-UTR,CDS,intron-Distal	3.01570	5.69345	HepG2	BCLAF1
chr7	33102133	33102167	-	intron-Distal	3.64986	5.35619	K562	AQR
chr7	33102054	33102097	-	intron-Distal	3.63620	5.17182	HepG2	RBM22
chr7	33057079	33057160	-	3'-UTR,CDS,intron-Distal	3.03183	4.61701	K562	ZNF622
chr7	33101893	33101968	-	intron-Distal	4.81706	4.47382	K562	EFTUD2
chr7	33066431	33066529	-	3'-UTR,CDS,intron-Distal,intron-Proximal	4.43744	4.45558	HepG2	GRWD1
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 22 entries

eCLIP assay for NT5C3A is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for NT5C3A is not available on ENCORE database.
53 RBPs can affect the levels of NT5C3A.

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The Knockdown/knockout RNA-Seq assay for NT5C3A is not available on ENCORE database.

53 RBPs can affect the gene expression of NT5C3A :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
NT5C3A	ENSG00000122643.14	1770.53200	1030.25390	0.78110	19.96790	18.37080	K562	DDX47
NT5C3A	ENSG00000122643.14	260.12070	566.52000	-1.12290	16.38410	15.12780	HepG2	SF3B4
NT5C3A	ENSG00000122643.14	294.54150	544.18490	-0.88560	10.70810	9.76690	HepG2	PTBP1
NT5C3A	ENSG00000122643.14	541.95880	969.42060	-0.83890	10.14310	9.14890	K562	PUS1
NT5C3A	ENSG00000122643.14	392.44850	718.68810	-0.87290	9.74820	8.29050	K562	TARDBP
NT5C3A	ENSG00000122643.14	209.18320	480.75940	-1.20050	9.70340	7.63640	HepG2	GRSF1
NT5C3A	ENSG00000122643.14	264.49540	545.73850	-1.04500	7.77930	6.65580	HepG2	EIF4B
NT5C3A	ENSG00000122643.14	1037.85650	594.25430	0.80440	7.12580	5.87810	K562	G3BP2
NT5C3A	ENSG00000122643.14	297.36530	524.61120	-0.81900	6.51040	5.51300	HepG2	G3BP1
NT5C3A	ENSG00000122643.14	293.98890	507.19090	-0.78680	6.04980	5.19130	HepG2	EIF2S1
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 61 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for NT5C3A is not available on ENCORE database.

18 RBPs can affect the splicing of NT5C3A :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	2ndExonStart	2ndExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	FDR	is_included	Cell Line	Affected by RBP
SE	NT5C3A	ENSG00000122643.14	chr7	-	33055281	33055482			33054128	33054443	33057050	33057213	-0.19900	0.00000	excluded	K562	SRSF1
SE	NT5C3A	ENSG00000122643.14	chr7	-	33075545	33075600			33066428	33066527	33102179	33102408	0.35600	0.00005	included	K562	WDR3
SE	NT5C3A	ENSG00000122643.14	chr7	-	33075545	33075600			33066428	33066527	33102179	33102408	0.29400	0.00132	included	K562	FMR1
SE	NT5C3A	ENSG00000122643.14	chr7	-	33075545	33075600			33066428	33066527	33102179	33102408	0.28100	0.00195	included	K562	WDR43
SE	NT5C3A	ENSG00000122643.14	chr7	-	33059246	33059336			33057050	33057213	33060883	33060969	-0.11600	0.00000	excluded	K562	AQR
SE	NT5C3A	ENSG00000122643.14	chr7	-	33075545	33075600			33066428	33066527	33102179	33102408	0.32600	0.00000	included	K562	U2AF1
A3SS	NT5C3A	ENSG00000122643.14	chr7	-	33055281	33055522			33055281	33055482	33057050	33057234	0.15300	0.00000	longer	K562	AQR
A3SS	NT5C3A	ENSG00000122643.14	chr7	-	33057050	33057277			33057050	33057213	33059246	33059336	0.16100	0.00000	longer	K562	AQR
MXE	NT5C3A	ENSG00000122643.14	chr7	-	33059246	33059336	33060883	33060987	33057050	33057213	33061664	33061711	0.13200	0.00000	1included	K562	AQR
MXE	NT5C3A	ENSG00000122643.14	chr7	-	33059246	33059336	33060883	33060954	33057050	33057213	33061664	33061711	0.10300	0.00000	1included	K562	AQR

Showing 1 to 10 of 27 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

NT5C3A

General Information

Functions

Localization

Domains (AlphaFold: NT5C3A)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for NT5C3A is not avaliable on ENCORE database.

11 proteins are bound to NT5C3A RNA:

eCLIP assay for NT5C3A is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for NT5C3A is not available on ENCORE database.

53 RBPs can affect the gene expression of NT5C3A :

The Knockdown/knockout RNA-Seq assay for NT5C3A is not available on ENCORE database.

18 RBPs can affect the splicing of NT5C3A :

The Knockdown/knockout RNA-Seq assay for NT5C3A is not avaliable on ENCORE database.