GNL1

General Information

Gene Name : GNL1
Gene ID : ENSG00000204590.12
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: GNL1)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	GNL1	ENSG00000204590.12	24.41	27.38	25.89	ENCSR000AEF
HepG2	GNL1	ENSG00000204590.12	48.27	43.28	45.78	ENCSR985KAT
K562	GNL1	ENSG00000204590.12	68.68	47.46	58.07	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for GNL1 is not avaliable on ENCORE database.

Proteins bound to RNA

GNL1 RNA is bound by 18 proteins.

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eCLIP assay for GNL1 is not avaliable on ENCORE database.

18 proteins are bound to GNL1 RNA:

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Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr6	30514493	30514548	-	CDS,intron-Distal	6.00724	16.39907	K562	LIN28B
chr6	30514548	30514567	-	CDS,intron-Distal	5.70087	12.57080	K562	LIN28B
chr6	30515240	30515321	-	CDS,intron-Distal,intron-Proximal	4.29954	11.71981	HepG2	U2AF2
chr6	30513901	30514093	-	CDS,intron-Distal	4.59687	11.53552	HepG2	PABPN1
chr6	30523789	30523906	-	5'-UTR,intron-Distal,intron-Proximal	4.96454	11.42662	K562	AQR
chr6	30520354	30520438	-	CDS,intron-Distal,intron-Proximal	4.30707	11.27084	HepG2	PPIG
chr6	30520193	30520284	-	CDS,intron-Distal,intron-Proximal	3.56894	11.13244	HepG2	PRPF8
chr6	30520263	30520439	-	CDS,intron-Distal,intron-Proximal	3.51390	8.52133	HepG2	G3BP1
chr6	30514373	30514472	-	intron-Distal,intron-Proximal	5.62613	8.34710	K562	AQR
chr6	30523942	30524061	-	5'-UTR,CDS,intron-Distal,intron-Proximal	3.72201	8.12116	K562	DDX3X
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 39 entries

eCLIP assay for GNL1 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for GNL1 is not available on ENCORE database.
54 RBPs can affect the levels of GNL1.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for GNL1 is not available on ENCORE database.

54 RBPs can affect the gene expression of GNL1 :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
GNL1	ENSG00000204590.8	2222.38020	1253.59570	0.82590	28.23330	26.82360	HepG2	SRSF9
GNL1	ENSG00000204590.8	3422.64050	2289.34570	0.58010	17.68080	16.70320	HepG2	SRFBP1
GNL1	ENSG00000204590.8	2495.86010	1581.83840	0.65780	11.60190	10.16340	K562	SRSF1
GNL1	ENSG00000204590.8	1981.02210	1393.44810	0.50750	10.37810	9.32290	HepG2	PCBP1
GNL1	ENSG00000204590.8	3249.02940	2419.43920	0.42520	8.71890	7.64310	K562	DDX47
GNL1	ENSG00000204590.8	1398.32720	895.79760	0.64240	7.72620	6.78800	HepG2	BOP1
GNL1	ENSG00000204590.8	2117.58510	1577.99170	0.42420	7.37580	6.56700	HepG2	NELFE
GNL1	ENSG00000204590.8	1766.19060	1327.12440	0.41220	7.71560	6.44010	HepG2	DDX19B
GNL1	ENSG00000204590.8	1896.82150	1434.97810	0.40250	7.27430	6.38490	HepG2	ACO1
GNL1	ENSG00000204590.8	2131.61470	1578.43690	0.43340	7.05600	6.15040	K562	FXR1
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 60 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for GNL1 is not available on ENCORE database.

4 RBPs can affect the splicing of GNL1 :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
SE	GNL1	ENSG00000204590.8	chr6	-	30514731	30514790	30514472	30514613	30514888	30515051	0.09100	0.00000	0.00357	included	K562	PHF6
A3SS	GNL1	ENSG00000204590.8	chr6	-	30522831	30523033	30522831	30522968	30523331	30523865	0.07200	0.00000	0.00000	longer	K562	AQR
SE	GNL1	ENSG00000204590.8	chr6	-	30514731	30514790	30514472	30514613	30514888	30515051	0.11200	0.00001	0.00121	included	K562	PTBP1
A3SS	GNL1	ENSG00000204590.8	chr6	-	30523331	30523568	30523331	30523497	30523907	30524951	0.06500	0.00021	0.00170	longer	K562	AQR
A5SS	GNL1	ENSG00000204590.8	chr6	-	30514731	30514967	30514888	30514967	30514472	30514613	0.07000	0.00026	0.03625	longer	K562	PTBP1
SE	GNL1	ENSG00000204590.8	chr6	-	30514731	30514790	30514472	30514613	30514888	30515051	0.07300	0.00097	0.02032	included	K562	SRSF1

Showing 1 to 6 of 6 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

GNL1

General Information

Functions

Localization

Domains (AlphaFold: GNL1)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for GNL1 is not avaliable on ENCORE database.

18 proteins are bound to GNL1 RNA:

eCLIP assay for GNL1 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for GNL1 is not available on ENCORE database.

54 RBPs can affect the gene expression of GNL1 :

The Knockdown/knockout RNA-Seq assay for GNL1 is not available on ENCORE database.

4 RBPs can affect the splicing of GNL1 :

The Knockdown/knockout RNA-Seq assay for GNL1 is not avaliable on ENCORE database.