THUMPD1

General Information

Gene Name : THUMPD1
Gene ID : ENSG00000066654.13
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: THUMPD1)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	THUMPD1	ENSG00000066654.13	28.01	25.67	26.84	ENCSR000AEF
HepG2	THUMPD1	ENSG00000066654.13	30.63	39.06	34.84	ENCSR985KAT
K562	THUMPD1	ENSG00000066654.13	39.02	38.58	38.80	ENCSR000AEO

Assays

1 Released experiments are available on ENCORE database.

Assay Type	Exp_Name	ENCODE ID	Target label	Biosample	Status	Linked Antibody	Controls	Method	Note
RNA Bind-n-Seq	RBNS: THUMPD1		THUMPD1	cell-free sample	Released

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

GeneName	gene_aliases	Status	Project	Note
THUMPD1	THUMPD1		Released	ENCODE4

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for THUMPD1 is not avaliable on ENCORE database.

The binding motifs of THUMPD1

Proteins bound to RNA

THUMPD1 RNA is bound by 10 proteins.

CanvasJS.com

eCLIP assay for THUMPD1 is not avaliable on ENCORE database.

10 proteins are bound to THUMPD1 RNA:

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Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr16	20750210	20750381	-	CDS,intron-Distal,intron-Proximal	3.05216	11.16442	K562	UCHL5
chr16	20750150	20750221	-	CDS,intron-Distal,intron-Proximal	4.81788	8.69247	K562	AQR
chr16	20750134	20750396	-	CDS,intron-Distal,intron-Proximal	3.15982	8.66222	HepG2	GRWD1
chr16	20750187	20750355	-	CDS,intron-Distal,intron-Proximal	3.04655	8.33225	HepG2	BCLAF1
chr16	20753017	20753112	-	5'-UTR,CDS,intron-Distal	3.46093	6.65904	HepG2	GRWD1
chr16	20748237	20748343	-	CDS,intron-Distal,intron-Proximal	3.22715	6.50801	HepG2	BCLAF1
chr16	20750204	20750387	-	CDS,intron-Distal,intron-Proximal	3.10083	5.35460	K562	GRWD1
chr16	20747387	20747492	-	3'-UTR,intron-Distal	3.75846	5.05222	K562	IGF2BP1
chr16	20747251	20747353	-	3'-UTR,intron-Distal	3.68879	4.81657	K562	IGF2BP1
chr16	20745856	20745923	-	3'-UTR,intron-Distal	3.21166	4.61367	K562	UPF1
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 18 entries

eCLIP assay for THUMPD1 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for THUMPD1 is not available on ENCORE database.
91 RBPs can affect the levels of THUMPD1.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for THUMPD1 is not available on ENCORE database.

91 RBPs can affect the gene expression of THUMPD1 :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
THUMPD1	ENSG00000066654.8	351.99060	1385.35800	-1.97670	55.21540	53.12430	HepG2	HNRNPA1
THUMPD1	ENSG00000066654.8	550.31010	2129.88450	-1.95250	48.16250	45.91840	HepG2	GPKOW
THUMPD1	ENSG00000066654.8	605.88520	1372.21260	-1.17940	32.68380	30.56410	HepG2	DNAJC21
THUMPD1	ENSG00000066654.8	760.73110	1980.99490	-1.38080	32.37330	30.41410	HepG2	TARDBP
THUMPD1	ENSG00000066654.8	1099.71700	2104.99310	-0.93670	23.23670	21.41060	HepG2	PUM2
THUMPD1	ENSG00000066654.8	4963.70170	2753.95170	0.84980	16.38810	15.11870	K562	AQR
THUMPD1	ENSG00000066654.8	1028.02580	1833.02290	-0.83430	16.25740	13.96360	K562	HNRNPA1
THUMPD1	ENSG00000066654.8	500.49510	1393.43710	-1.47720	13.87830	11.30720	HepG2	NONO
THUMPD1	ENSG00000066654.8	937.34210	1993.95240	-1.08900	12.43210	11.02900	HepG2	EIF4B
THUMPD1	ENSG00000066654.8	798.56900	1487.46330	-0.89740	11.11580	9.68020	HepG2	XRN2
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 108 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for THUMPD1 is not available on ENCORE database.

3 RBPs can affect the splicing of THUMPD1 :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
A3SS	THUMPD1	ENSG00000066654.8	chr16	-	20748410	20748656	20748410	20748608	20749029	20749278	0.10400	0.00000	0.00000	longer	K562	AQR
A3SS	THUMPD1	ENSG00000066654.8	chr16	-	20750218	20750446	20750218	20750393	20752830	20753118	0.19300	0.00000	0.00000	longer	K562	AQR
SE	THUMPD1	ENSG00000066654.8	chr16	-	20749409	20749591	20749029	20749278	20750218	20750393	-0.05400	0.00032	0.00534	excluded	HepG2	U2AF2
SE	THUMPD1	ENSG00000066654.8	chr16	-	20749409	20749591	20749029	20749278	20750218	20750393	-0.05700	0.00196	0.07443	excluded	HepG2	SFPQ

Showing 1 to 4 of 4 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

THUMPD1

General Information

Functions

Localization

Domains (AlphaFold: THUMPD1)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for THUMPD1 is not avaliable on ENCORE database.

10 proteins are bound to THUMPD1 RNA:

eCLIP assay for THUMPD1 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for THUMPD1 is not available on ENCORE database.

91 RBPs can affect the gene expression of THUMPD1 :

The Knockdown/knockout RNA-Seq assay for THUMPD1 is not available on ENCORE database.

3 RBPs can affect the splicing of THUMPD1 :

The Knockdown/knockout RNA-Seq assay for THUMPD1 is not avaliable on ENCORE database.