SSX3

General Information

Gene Name : SSX3
Gene ID : ENSG00000165584.15
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: SSX3)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	SSX3	ENSG00000165584.15	0.00	0.00	0.00	ENCSR000AEF
HepG2	SSX3	ENSG00000165584.15	0.00	0.00	0.00	ENCSR985KAT
K562	SSX3	ENSG00000165584.15	48.53	48.67	48.60	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for SSX3 is not avaliable on ENCORE database.

Proteins bound to RNA

SSX3 RNA is bound by 7 proteins.

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eCLIP assay for SSX3 is not avaliable on ENCORE database.

7 proteins are bound to SSX3 RNA:

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Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chrX	48206028	48206084	-	3'-UTR,intron-Distal,intron-Proximal	3.88622	13.37908	K562	HNRNPL
chrX	48206993	48207094	-	CDS,intron-Distal,intron-Proximal	5.36168	8.26501	K562	SF3B4
chrX	48211529	48211583	-	CDS,intron-Distal,intron-Proximal	4.23288	5.96588	K562	ZNF622
chrX	48211425	48211559	-	CDS,intron-Distal,intron-Proximal	3.70314	5.66421	K562	PRPF8
chrX	48214628	48214700	-	5'-UTR,CDS,intron-Distal	3.08491	5.38953	K562	ZNF622
chrX	48206029	48206086	-	3'-UTR,intron-Distal,intron-Proximal	4.31013	4.06667	K562	GTF2F1
chrX	48211519	48211584	-	CDS,intron-Distal,intron-Proximal	3.40739	3.99908	K562	BUD13
chrX	48206933	48206973	-	3'-UTR,CDS,intron-Distal,intron-Proximal	4.07449	3.32022	K562	UCHL5
chrX	48208924	48208993	-	3'-UTR,CDS,intron-Distal,intron-Proximal	4.17691	3.12843	K562	PRPF8
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 9 of 9 entries

eCLIP assay for SSX3 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for SSX3 is not available on ENCORE database.
32 RBPs can affect the levels of SSX3.

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The Knockdown/knockout RNA-Seq assay for SSX3 is not available on ENCORE database.

32 RBPs can affect the gene expression of SSX3 :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
SSX3	ENSG00000165584.11	420.40550	864.95670	-1.04080	21.33490	19.68820	K562	DDX47
SSX3	ENSG00000165584.11	710.77200	420.67150	0.75660	8.19460	7.21680	K562	HNRNPC
SSX3	ENSG00000165584.11	818.90440	553.21000	0.56580	7.24270	5.98640	K562	MTPAP
SSX3	ENSG00000165584.11	915.73990	570.61560	0.68230	7.10000	5.91220	K562	TARDBP
SSX3	ENSG00000165584.11	893.35200	606.50670	0.55860	6.94070	5.69450	K562	SF3A3
SSX3	ENSG00000165584.11	374.36540	574.74390	-0.61850	6.40520	5.54000	K562	FXR1
SSX3	ENSG00000165584.11	225.54390	427.69360	-0.92320	6.42360	5.16870	K562	RPS19
SSX3	ENSG00000165584.11	302.27030	489.24020	-0.69470	6.17610	5.00390	K562	EIF3G
SSX3	ENSG00000165584.11	673.43160	998.67300	-0.56850	5.76680	4.80330	K562	AKAP8L
SSX3	ENSG00000165584.11	362.48940	618.32880	-0.77040	6.01000	4.46540	K562	RPS3
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 32 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for SSX3 is not available on ENCORE database.

6 RBPs can affect the splicing of SSX3 :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
SE	SSX3	ENSG00000165584.11	chrX	-	48209794	48209902	48209421	48209557	48211534	48211584	-0.06300	0.00013	0.00720	excluded	K562	PRPF8
SE	SSX3	ENSG00000165584.11	chrX	-	48208974	48209022	48206934	48207039	48209421	48209557	0.25400	0.00020	0.03624	included	K562	ZC3H8
SE	SSX3	ENSG00000165584.11	chrX	-	48209794	48209902	48209421	48209557	48211534	48211584	-0.06600	0.00022	0.01594	excluded	K562	EFTUD2
SE	SSX3	ENSG00000165584.11	chrX	-	48208974	48209022	48206942	48207039	48209421	48209557	-0.22300	0.00055	0.01048	excluded	K562	PUS1
A5SS	SSX3	ENSG00000165584.11	chrX	-	48209368	48209557	48209421	48209557	48206942	48207039	-0.05800	0.00071	0.08839	shorter	K562	TARDBP
SE	SSX3	ENSG00000165584.11	chrX	-	48208974	48209022	48206934	48207039	48209421	48209557	-0.23300	0.00250	0.04067	excluded	K562	HNRNPC

Showing 1 to 6 of 6 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

SSX3

General Information

Functions

Localization

Domains (AlphaFold: SSX3)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for SSX3 is not avaliable on ENCORE database.

7 proteins are bound to SSX3 RNA:

eCLIP assay for SSX3 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for SSX3 is not available on ENCORE database.

32 RBPs can affect the gene expression of SSX3 :

The Knockdown/knockout RNA-Seq assay for SSX3 is not available on ENCORE database.

6 RBPs can affect the splicing of SSX3 :

The Knockdown/knockout RNA-Seq assay for SSX3 is not avaliable on ENCORE database.