CTC-338M12.4

General Information

Gene Name       : CTC-338M12.4
Gene ID             : ENSG00000233937.6
Essential Gene : No

Functions

Localization

Domains (AlphaFold: CTC-338M12.4)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878CTC-338M12.4ENSG00000233937.64.916.805.86ENCSR000AEF
HepG2CTC-338M12.4ENSG00000233937.68.409.639.02ENCSR985KAT
K562CTC-338M12.4ENSG00000233937.621.0014.0417.52ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for CTC-338M12.4 is not avaliable on ENCORE database.



Proteins bound to RNA
  • CTC-338M12.4 RNA is bound by 17 proteins.  







eCLIP assay for CTC-338M12.4 is not avaliable on ENCORE database.





17 proteins are bound to CTC-338M12.4 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr5180692676180692692+intron-Distal6.0356619.01023K562NSUN2
chr5180673980180674002+intron-Distal,intron-Proximal3.456114.22460K562RBM15
chr5180688241180688341+intron-Distal4.857487.97419K562DDX3X
chr5180694131180694190+intron-Distal5.568156.08124K562AGGF1
chr5180685032180685136+intron-Distal3.044713.23341HepG2CSTF2
chr5180692669180692693+intron-Distal4.782246.24350K562PABPC4
chr5180684092180684130+3'-UTR,intron-Distal,intron-Proximal3.985873.24706K562NOLC1
chr5180688236180688357+intron-Distal5.627467.49422HepG2DDX3X
chr5180676414180676447+intron-Distal4.376794.33299K562ILF3
chr5180677147180677215+intron-Distal3.305626.10043K562ILF3
chr5180675093180675266+intron-Distal3.127835.55940K562HNRNPK
chr5180692667180692676+intron-Distal3.6172319.64530K562WRN
chr5180683906180683980+3'-UTR,intron-Distal4.750788.21054K562SAFB
chr5180692667180692694+intron-Distal4.493819.50052HepG2XPO5
chr5180692667180692676+intron-Distal6.0356619.01023K562NSUN2
chr5180684593180684665+intron-Distal4.535796.08649K562CSTF2T
chr5180692676180692692+intron-Distal3.6172319.64530K562WRN
chr5180690949180691088+intron-Distal,intron-Proximal4.191564.50986K562IGF2BP1
chr5180694740180694824+intron-Distal4.326158.33958K562AGGF1
chr5180688437180688521+intron-Distal,intron-Proximal3.780923.39593HepG2PRPF4
chr5180683773180683788+3'-UTR,intron-Distal3.201483.59910K562NOLC1
chr5180679172180679222+intron-Distal3.566613.32861HepG2U2AF2
chr5180683909180683962+3'-UTR,intron-Distal4.046264.23812HepG2LSM11
chr5180677220180677257+intron-Distal4.127544.51699K562ILF3
chr5180674045180674090+intron-Proximal3.793868.27517K562RBM15
chr5180674080180674145+intron-Proximal3.663534.66813HepG2RBM15
chr5180674111180674167+intron-Proximal3.9723212.03308K562RBM15
chr5180673883180673943+intron-Proximal5.348128.98006K562RBM15
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for CTC-338M12.4 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for CTC-338M12.4 is not available on ENCORE database.

  • 57 RBPs can affect the levels of CTC-338M12.4.  








The Knockdown/knockout RNA-Seq assay for CTC-338M12.4 is not available on ENCORE database.





57 RBPs can affect the gene expression of CTC-338M12.4 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
CTC-338M12.4ENSG00000233937.286.6541050.500900.778901.967901.38310HepG2DDX21
CTC-338M12.4ENSG00000233937.2261.46370134.835700.955305.430504.61700HepG2EIF2S1
CTC-338M12.4ENSG00000233937.281.41660145.07630-0.833402.512101.85500HepG2EIF4B
CTC-338M12.4ENSG00000233937.2121.2585045.204001.423506.209703.68060HepG2EXOSC9
CTC-338M12.4ENSG00000233937.250.8422091.47020-0.847302.034801.36900HepG2FIP1L1
CTC-338M12.4ENSG00000233937.2164.7752081.816501.009905.167804.27060HepG2HNRNPL
CTC-338M12.4ENSG00000233937.276.0451026.510301.520204.285503.51720HepG2HNRNPLL
CTC-338M12.4ENSG00000233937.290.32720151.22980-0.743502.379201.79150HepG2MATR3
CTC-338M12.4ENSG00000233937.2162.8368089.045500.870703.799502.90490HepG2NOL12
CTC-338M12.4ENSG00000233937.2160.8529090.205700.834403.165802.54140HepG2PUM1
CTC-338M12.4ENSG00000233937.259.91960148.63030-1.310606.647405.92740HepG2RBM22
CTC-338M12.4ENSG00000233937.2153.0832085.295500.843702.874701.86360HepG2RBM27
CTC-338M12.4ENSG00000233937.295.37700144.98960-0.604201.996301.52060HepG2NELFE
CTC-338M12.4ENSG00000233937.289.83250145.61600-0.696902.238501.51880HepG2RPS3A
CTC-338M12.4ENSG00000233937.2214.30170137.119200.644102.605301.33500HepG2SART3
CTC-338M12.4ENSG00000233937.2129.1975081.462200.665302.132701.50330HepG2SLBP
CTC-338M12.4ENSG00000233937.253.80050141.57650-1.395906.819806.15800HepG2SRSF1
CTC-338M12.4ENSG00000233937.298.3097049.176400.999303.567902.79210HepG2SRSF7
CTC-338M12.4ENSG00000233937.2224.13370359.09990-0.680005.020504.29420K562AGGF1
CTC-338M12.4ENSG00000233937.2294.47840394.59300-0.422202.258201.38270K562AKAP8
CTC-338M12.4ENSG00000233937.2211.06010373.65890-0.824106.240405.23090K562AKAP8L
CTC-338M12.4ENSG00000233937.2266.00230392.05640-0.559604.042702.92000K562ATP5C1
CTC-338M12.4ENSG00000233937.2240.51760156.260900.622103.418002.34610K562BCLAF1
CTC-338M12.4ENSG00000233937.2236.92190429.14700-0.857108.238606.19030K562CCDC124
CTC-338M12.4ENSG00000233937.2128.0374052.764201.278805.563304.45830K562CPSF6
CTC-338M12.4ENSG00000233937.2189.83210118.547200.679203.074701.95470K562CSTF2
CTC-338M12.4ENSG00000233937.2109.54120172.83550-0.657902.979002.30420K562DDX47
CTC-338M12.4ENSG00000233937.2244.69880402.08930-0.716506.372204.95870K562DKC1
CTC-338M12.4ENSG00000233937.292.28110183.53750-0.992005.557004.74040K562FXR1
CTC-338M12.4ENSG00000233937.2238.99280128.573200.894304.974404.19650K562HNRNPC
CTC-338M12.4ENSG00000233937.286.82240151.58980-0.804002.946501.67130K562HNRNPK
CTC-338M12.4ENSG00000233937.2426.01010266.417700.677105.497304.22440K562HNRNPU
CTC-338M12.4ENSG00000233937.2229.26240151.879900.594002.274201.36930K562IGF2BP2
CTC-338M12.4ENSG00000233937.2244.32970396.54860-0.698705.189503.98850K562KIF1C
CTC-338M12.4ENSG00000233937.2231.74300379.59200-0.711904.167802.76680K562MAK16
CTC-338M12.4ENSG00000233937.2191.61520444.23410-1.2131012.8280010.65580K562MBNL1
CTC-338M12.4ENSG00000233937.2459.00980316.133000.537902.781701.64980K562MSI2
CTC-338M12.4ENSG00000233937.2230.32080141.654500.701203.298002.41850K562MTPAP
CTC-338M12.4ENSG00000233937.2140.63230311.37570-1.146706.935105.30290K562NAA15
CTC-338M12.4ENSG00000233937.2334.63650157.363301.0884011.6249010.23850K562NSUN2
CTC-338M12.4ENSG00000233937.2345.10060123.381001.483807.963905.97710K562PABPN1
CTC-338M12.4ENSG00000233937.2236.71130370.57340-0.646603.733003.11590K562PUS1
CTC-338M12.4ENSG00000233937.2138.41420361.06270-1.3833015.1146013.71270K562RBM15
CTC-338M12.4ENSG00000233937.269.36940127.02380-0.872703.034201.90090K562SAFB
CTC-338M12.4ENSG00000233937.2274.46210167.969200.708304.433702.93000K562SRSF7
CTC-338M12.4ENSG00000233937.2191.09390121.469500.653602.743201.47420K562SSB
CTC-338M12.4ENSG00000233937.2215.42090128.034100.750503.036301.96890K562SUPV3L1
CTC-338M12.4ENSG00000233937.268.03780143.00730-1.071705.072503.95280K562SYNCRIP
CTC-338M12.4ENSG00000233937.2177.65270110.883800.679902.183401.36180K562TIAL1
CTC-338M12.4ENSG00000233937.2254.53700145.617200.805603.993302.64290K562TRA2A
CTC-338M12.4ENSG00000233937.2186.97170117.861100.665602.646601.72590K562TRIM56
CTC-338M12.4ENSG00000233937.245.3504092.82770-1.033402.752901.66340K562U2AF1
CTC-338M12.4ENSG00000233937.246.3912095.91610-1.047903.696002.76420K562U2AF2
CTC-338M12.4ENSG00000233937.2222.35350135.564500.713802.993801.92710K562UCHL5
CTC-338M12.4ENSG00000233937.2276.63870166.857900.729305.198704.24730K562UPF1
CTC-338M12.4ENSG00000233937.2239.76820142.771500.747804.430303.31240K562WDR3
CTC-338M12.4ENSG00000233937.2259.12720138.131100.907504.688902.96020K562XRN2
CTC-338M12.4ENSG00000233937.2449.84580293.199400.617404.662103.49850K562ZC3H8
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for CTC-338M12.4 is not available on ENCORE database.






No RBPs affect the alternative splcing events of CTC-338M12.4 on ENCORE database.





The Knockdown/knockout RNA-Seq assay for CTC-338M12.4 is not avaliable on ENCORE database.