COLCA1

General Information

Gene Name : COLCA1
Gene ID : ENSG00000196167.9
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: COLCA1)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	COLCA1	ENSG00000196167.9	0.01	0.04	0.03	ENCSR000AEF
HepG2	COLCA1	ENSG00000196167.9	0.53	0.51	0.52	ENCSR985KAT
K562	COLCA1	ENSG00000196167.9	0.00	0.00	0.00	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for COLCA1 is not avaliable on ENCORE database.

Proteins bound to RNA

COLCA1 RNA is bound by 1 proteins.

CanvasJS.com

eCLIP assay for COLCA1 is not avaliable on ENCORE database.

1 proteins are bound to COLCA1 RNA:

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Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr11	111167286	111167383	-	3'-UTR,5'-UTR,intron-Distal	3.46607	4.19039	HepG2	PTBP1
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 1 of 1 entries

eCLIP assay for COLCA1 is not avaliable on ENCORE database.

Summary
DE Affected by

Diffrential Expression

The Knockdown/knockout assay for COLCA1 is not available on ENCORE database.
49 RBPs can affect the levels of COLCA1.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for COLCA1 is not available on ENCORE database.

49 RBPs can affect the gene expression of COLCA1 :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
COLCA1	ENSG00000196167.5	232.28660	48.41280	2.26230	19.99700	18.36260	HepG2	CPSF6
COLCA1	ENSG00000196167.5	315.52790	105.22250	1.58420	14.33740	12.88030	HepG2	G3BP1
COLCA1	ENSG00000196167.5	251.37570	91.51190	1.45770	14.04610	12.63950	HepG2	HNRNPL
COLCA1	ENSG00000196167.5	244.11100	92.04220	1.40710	13.23560	12.06330	HepG2	PUS1
COLCA1	ENSG00000196167.5	184.35580	59.55660	1.63010	11.44750	10.19710	HepG2	SRSF7
COLCA1	ENSG00000196167.5	315.58080	145.27210	1.11920	10.36090	9.31850	HepG2	ETF1
COLCA1	ENSG00000196167.5	199.34860	82.97120	1.26450	8.14770	7.21490	HepG2	SF3B4
COLCA1	ENSG00000196167.5	37.26500	128.60060	-1.78700	7.57050	6.73560	HepG2	AKAP1
COLCA1	ENSG00000196167.5	209.90360	100.90770	1.05660	7.32090	6.45170	HepG2	PUM1
COLCA1	ENSG00000196167.5	142.64150	51.05220	1.48220	7.30240	6.20020	HepG2	TARDBP
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 49 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

COLCA1

General Information

Functions

Localization

Domains (AlphaFold: COLCA1)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for COLCA1 is not avaliable on ENCORE database.

1 proteins are bound to COLCA1 RNA:

eCLIP assay for COLCA1 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for COLCA1 is not available on ENCORE database.

49 RBPs can affect the gene expression of COLCA1 :

The Knockdown/knockout RNA-Seq assay for COLCA1 is not available on ENCORE database.

No RBPs affect the alternative splcing events of COLCA1 on ENCORE database.

The Knockdown/knockout RNA-Seq assay for COLCA1 is not avaliable on ENCORE database.