GIN1

General Information

Gene Name       : GIN1
Gene ID             : ENSG00000145723.16
Essential Gene : No

Functions

Localization

Domains (AlphaFold: GIN1)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878GIN1ENSG00000145723.167.354.285.81ENCSR000AEF
HepG2GIN1ENSG00000145723.162.623.803.21ENCSR985KAT
K562GIN1ENSG00000145723.164.513.564.04ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  
  GeneName    Cell_Line    Method    Exp_ID    Control_ID    Sample_reps    Control_reps    KD%    Status    Project    Note  
GIN1Ribo-STAMP-293TshRNAGIN1-BGRSLV03-29,GIN1-BGRSLV03-30NT-BGRSLV03-1,NT-BGRSLV03-2,SubmittedENCORE2
GIN1Ribo-STAMP-293TshRNABGRSDLV02-29,BGRSDLV02-30BGRSDLV02-1,BGRSDLV02-2NotSatisfiedENCORE2
GIN1Ribo-STAMP-293TshRNABGRSDLV02-31dox,BGRSDLV02-32doxBGRSDLV02-1,BGRSDLV02-2NotSatisfiedENCORE2
GIN1Ribo-STAMP-293TshRNABGRSDLV03-21,BGRSDLV03-22BGRSDLV03-1,BGRSDLV03-2NotSatisfiedENCORE2
GIN1Ribo-STAMP-293TshRNABGRSDLV03-23dox,BGRSDLV03-24doxBGRSDLV03-1,BGRSDLV03-2NotSatisfiedENCORE2


  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for GIN1 is not avaliable on ENCORE database.



Proteins bound to RNA

  • NO known proteins bind on GIN1 RNA with finished eCLIP experiments on ENCORE database.





eCLIP assay for GIN1 is not avaliable on ENCORE database.






NO known proteins are bound to GIN1 RNA with finished eCLIP experiments on ENCORE database.





eCLIP assay for GIN1 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for GIN1 is not available on ENCORE database.

  • 12 RBPs can affect the levels of GIN1.  








The Knockdown/knockout RNA-Seq assay for GIN1 is not available on ENCORE database.





12 RBPs can affect the gene expression of GIN1 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
GIN1ENSG00000145723.12139.8590081.244300.783501.947101.36390HepG2DKC1
GIN1ENSG00000145723.12152.3771090.754000.747502.815702.13570HepG2SF3A3
GIN1ENSG00000145723.12192.84700127.944300.591802.408501.95910HepG2SRSF1
GIN1ENSG00000145723.12182.18300129.998200.486802.078701.61810HepG2SSB
GIN1ENSG00000145723.1281.28310131.35030-0.692402.221601.51210K562CPSF6
GIN1ENSG00000145723.12203.27770330.42020-0.700804.425603.25060K562EIF4G2
GIN1ENSG00000145723.12139.06920192.83730-0.471601.938201.36450K562PTBP1
GIN1ENSG00000145723.12132.17950217.54350-0.718803.392902.80040K562PUS1
GIN1ENSG00000145723.12131.14320194.58160-0.569202.325801.34260K562NELFE
GIN1ENSG00000145723.12125.10830191.32440-0.612802.532401.85350K562TARDBP
GIN1ENSG00000145723.1270.79550128.51080-0.860202.947001.68770K562XRN2
GIN1ENSG00000145723.12178.05920302.93370-0.766605.161803.92440K562ZC3H8
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for GIN1 is not available on ENCORE database.





1 RBPs can affect the splicing of GIN1 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SEGIN1ENSG00000145723.12chr5-102433017102433194102432244102432530102433293102433485-0.201000.003070.03121excludedK562AQR

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for GIN1 is not avaliable on ENCORE database.