Experiment Information (Status: Released)

RBP	SRSF5
gene_aliases
Status	Released
Status_date	2022-07-15
Project	ENCODE3
Note
ID	89

Motif Logo

Sample Information

Sample_Name	Sample_Type	Read_size_range	rbns_protein_concentration	FILE_ID
SRSF5-mockPD	CN	20-20	0	SRSF5_0.fastq.gz
SRSF5-1300	RBNS	20-20	1300	SRSF5_1300.fastq.gz
SRSF5-20	RBNS	20-20	20	SRSF5_20.fastq.gz
SRSF5-320	RBNS	20-20	320	SRSF5_320.fastq.gz
SRSF5-5	RBNS	20-20	5	SRSF5_5.fastq.gz
SRSF5-80	RBNS	20-20	80	SRSF5_80.fastq.gz
SRSF5-input	CN	20-20	0	SRSF5_input.fastq.gz

Data Submission Information

ENCODE_alias	ENCODE_accession	object_type	assay_type	Sample_ID	SAMPLENAMEID	Selected	Status	Status_Date	Project	protocol_folder	protocol_file_name	ID
chris-burge:SRSF5	ENCSR914PGB	experiment	RNA Bind-n-Seq	SRSF5	EIF4A3-BGHcLV16-26	Yes	Released	2022-07-12	ENCODE3			8125
chris-burge:SRSF5-TAF15-input-cntl	ENCSR876NDK	experiment	RNA Bind-n-Seq	SRSF5	MECP2-BGHcLV16-33	Yes	Released	2022-07-12	ENCODE3			8126
chris-burge:SRSF5-mockPD-cntl	ENCSR065EMP	experiment	RNA Bind-n-Seq	SRSF5	EIF4A3-BGHcLV16-25	Yes	Released	2022-07-12	ENCODE3			8127
chris-burge:lib-SRSF5-1	ENCLB993NSD	library	RNA Bind-n-Seq	SRSF5	GSK3B-BGHcLV16-31	Yes	Released	2022-07-12	ENCODE3			8563
chris-burge:lib-SRSF5-2	ENCLB739FWL	library	RNA Bind-n-Seq	SRSF5	EIF4E-BGHcLV16-29	Yes	Released	2022-07-12	ENCODE3			8564
chris-burge:lib-SRSF5-3	ENCLB325RUL	library	RNA Bind-n-Seq	SRSF5	GSK3B-BGHcLV16-32	Yes	Released	2022-07-12	ENCODE3			8565
chris-burge:lib-SRSF5-4	ENCLB246FRA	library	RNA Bind-n-Seq	SRSF5	EIF4E-BGHcLV16-30	Yes	Released	2022-07-12	ENCODE3			8566
chris-burge:lib-SRSF5-5	ENCLB086UIX	library	RNA Bind-n-Seq	SRSF5	EIF4A3-BGHcLV16-26	Yes	Released	2022-07-12	ENCODE3			8567
chris-burge:lib-SRSF5-mockPD-cntl	ENCLB685XOZ	library	RNA Bind-n-Seq	SRSF5	MECP2-BGHcLV16-33	Yes	Released	2022-07-12	ENCODE3			8568
chris-burge:lib-SRSF5-TAF15-input-cntl	ENCLB118URQ	library	RNA Bind-n-Seq	SRSF5	EIF4A3-BGHcLV16-25	Yes	Released	2022-07-12	ENCODE3			8569
chris-burge:SRSF5_0.fastq.gz	ENCFF200YPB	file_fastq	RNA Bind-n-Seq	SRSF5	EIF4A3-BGHcLV16-25	Yes	Released	2022-07-14	ENCODE3			8957
chris-burge:SRSF5_1300.fastq.gz	ENCFF388IAE	file_fastq	RNA Bind-n-Seq	SRSF5	EIF4A3-BGHcLV16-26	Yes	Released	2022-07-14	ENCODE3			8958
chris-burge:SRSF5_20.fastq.gz	ENCFF229OOD	file_fastq	RNA Bind-n-Seq	SRSF5	EIF4E-BGHcLV16-29	Yes	Released	2022-07-14	ENCODE3			8959
chris-burge:SRSF5_320.fastq.gz	ENCFF804SHE	file_fastq	RNA Bind-n-Seq	SRSF5	EIF4E-BGHcLV16-30	Yes	Released	2022-07-14	ENCODE3			8960
chris-burge:SRSF5_5.fastq.gz	ENCFF901VZV	file_fastq	RNA Bind-n-Seq	SRSF5	GSK3B-BGHcLV16-31	Yes	Released	2022-07-14	ENCODE3			8961
chris-burge:SRSF5_80.fastq.gz	ENCFF130TEX	file_fastq	RNA Bind-n-Seq	SRSF5	GSK3B-BGHcLV16-32	Yes	Released	2022-07-14	ENCODE3			8962
chris-burge:TAF15_input.fastq.gz	ENCFF325RIN	file_fastq	RNA Bind-n-Seq	SRSF5	PTGES3-BGHcLV16-46	Yes	Released	2022-07-14	ENCODE3			8980
chris-burge:SRSF5_enrichment_R.4mers.txt	ENCFF842OMI	file_enrichment	RNA Bind-n-Seq	SRSF5	EIF4A3-BGHcLV16-26	Yes	Released	2022-07-14	ENCODE3			9489
chris-burge:SRSF5_enrichment_R.5mers.txt	ENCFF762GOC	file_enrichment	RNA Bind-n-Seq	SRSF5	EIF4A3-BGHcLV16-26	Yes	Released	2022-07-14	ENCODE3			9490
chris-burge:SRSF5_enrichment_R.6mers.txt	ENCFF351IBT	file_enrichment	RNA Bind-n-Seq	SRSF5	EIF4A3-BGHcLV16-26	Yes	Released	2022-07-14	ENCODE3			9491
chris-burge:SRSF5_est_binding_frac.4mers.txt	ENCFF977YCA	file_library-fraction	RNA Bind-n-Seq	SRSF5	EIF4A3-BGHcLV16-26	Yes	Released	2022-07-14	ENCODE3			9492
chris-burge:SRSF5_est_binding_frac.5mers.txt	ENCFF214SJB	file_library-fraction	RNA Bind-n-Seq	SRSF5	EIF4A3-BGHcLV16-26	Yes	Released	2022-07-14	ENCODE3			9493
chris-burge:SRSF5_est_binding_frac.6mers.txt	ENCFF478NNJ	file_library-fraction	RNA Bind-n-Seq	SRSF5	EIF4A3-BGHcLV16-26	Yes	Released	2022-07-14	ENCODE3			9494

File Information

file_name	file_format	output_type	assay_type	lab	derived_from	controlled_by	Project	Note
SRSF5.logo.png	png	document	RNA Bind-n-Seq	Burge Lab			ENCODE3
SRSF5_0.fastq.gz	fastq	reads	RNA Bind-n-Seq	Burge Lab			ENCODE3
SRSF5_1300.fastq.gz	fastq	reads	RNA Bind-n-Seq	Burge Lab		SRSF5_0.fastq.gz,SRSF5_input.fastq.gz	ENCODE3
SRSF5_20.fastq.gz	fastq	reads	RNA Bind-n-Seq	Burge Lab		SRSF5_0.fastq.gz,SRSF5_input.fastq.gz	ENCODE3
SRSF5_320.fastq.gz	fastq	reads	RNA Bind-n-Seq	Burge Lab		SRSF5_0.fastq.gz,SRSF5_input.fastq.gz	ENCODE3
SRSF5_5.fastq.gz	fastq	reads	RNA Bind-n-Seq	Burge Lab		SRSF5_0.fastq.gz,SRSF5_input.fastq.gz	ENCODE3
SRSF5_80.fastq.gz	fastq	reads	RNA Bind-n-Seq	Burge Lab		SRSF5_0.fastq.gz,SRSF5_input.fastq.gz	ENCODE3
SRSF5_input.fastq.gz	fastq	reads	RNA Bind-n-Seq	Burge Lab			ENCODE3
SRSF5_enrichment_R.4mers.txt	tsv	enrichment	RNA Bind-n-Seq	Burge Lab	SRSF5_0.fastq.gz,SRSF5_1300.fastq.gz,SRSF5_20.fastq.gz,SRSF5_320.fastq.gz,SRSF5_5.fastq.gz,SRSF5_80.fastq.gz,SRSF5_input.fastq.gz		ENCODE3
SRSF5_est_binding_frac.4mers.txt	tsv	enrichment	RNA Bind-n-Seq	Burge Lab	SRSF5_0.fastq.gz,SRSF5_1300.fastq.gz,SRSF5_20.fastq.gz,SRSF5_320.fastq.gz,SRSF5_5.fastq.gz,SRSF5_80.fastq.gz,SRSF5_input.fastq.gz		ENCODE3
SRSF5_enrichment_R.5mers.txt	tsv	enrichment	RNA Bind-n-Seq	Burge Lab	SRSF5_0.fastq.gz,SRSF5_1300.fastq.gz,SRSF5_20.fastq.gz,SRSF5_320.fastq.gz,SRSF5_5.fastq.gz,SRSF5_80.fastq.gz,SRSF5_input.fastq.gz		ENCODE3
SRSF5_est_binding_frac.5mers.txt	tsv	enrichment	RNA Bind-n-Seq	Burge Lab	SRSF5_0.fastq.gz,SRSF5_1300.fastq.gz,SRSF5_20.fastq.gz,SRSF5_320.fastq.gz,SRSF5_5.fastq.gz,SRSF5_80.fastq.gz,SRSF5_input.fastq.gz		ENCODE3
SRSF5_enrichment_R.6mers.txt	tsv	enrichment	RNA Bind-n-Seq	Burge Lab	SRSF5_0.fastq.gz,SRSF5_1300.fastq.gz,SRSF5_20.fastq.gz,SRSF5_320.fastq.gz,SRSF5_5.fastq.gz,SRSF5_80.fastq.gz,SRSF5_input.fastq.gz		ENCODE3
SRSF5_est_binding_frac.6mers.txt	tsv	enrichment	RNA Bind-n-Seq	Burge Lab	SRSF5_0.fastq.gz,SRSF5_1300.fastq.gz,SRSF5_20.fastq.gz,SRSF5_320.fastq.gz,SRSF5_5.fastq.gz,SRSF5_80.fastq.gz,SRSF5_input.fastq.gz		ENCODE3