Experiment Information (Status: Released)

RBP	IGF2BP1
gene_aliases
Status	Released
Status_date	2022-07-15
Project	ENCODE3
Note
ID	80

Motif Logo

Sample Information

Sample_Name	Sample_Type	Read_size_range	rbns_protein_concentration	FILE_ID
IGF2BP1-mockPD	CN	40-40	0	IMP1_0.fastq.gz
IGF2BP1-1300	RBNS	40-40	1300	IMP1_1300.fastq.gz
IGF2BP1-20	RBNS	40-40	20	IMP1_20.fastq.gz
IGF2BP1-320	RBNS	40-40	320	IMP1_320.fastq.gz
IGF2BP1-5	RBNS	40-40	5	IMP1_5.fastq.gz
IGF2BP1-80	RBNS	40-40	80	IMP1_80.fastq.gz
IGF2BP1-input	CN	40-40	0	IMP1_input.fastq.gz

Data Submission Information

ENCODE_alias	ENCODE_accession	object_type	assay_type	Sample_ID	SAMPLENAMEID	Selected	Status	Status_Date	Project	protocol_folder	protocol_file_name	ID
chris-burge:IMP1	ENCSR928XOW	experiment	RNA Bind-n-Seq	IGF2BP1		Yes	Released	2022-07-12	ENCODE3			8040
chris-burge:IMP1-input-cntl	ENCSR258MXY	experiment	RNA Bind-n-Seq	IGF2BP1		Yes	Released	2022-07-12	ENCODE3			8041
chris-burge:IMP1-mockPD-cntl	ENCSR767WJH	experiment	RNA Bind-n-Seq	IGF2BP1		Yes	Released	2022-07-12	ENCODE3			8042
chris-burge:lib-IMP1-1	ENCLB620YZO	library	RNA Bind-n-Seq	IGF2BP1		Yes	Released	2022-07-12	ENCODE3			8309
chris-burge:lib-IMP1-2	ENCLB533HZM	library	RNA Bind-n-Seq	IGF2BP1		Yes	Released	2022-07-12	ENCODE3			8310
chris-burge:lib-IMP1-3	ENCLB473YSV	library	RNA Bind-n-Seq	IGF2BP1		Yes	Released	2022-07-12	ENCODE3			8311
chris-burge:lib-IMP1-4	ENCLB691PDR	library	RNA Bind-n-Seq	IGF2BP1		Yes	Released	2022-07-12	ENCODE3			8312
chris-burge:lib-IMP1-5	ENCLB058DBP	library	RNA Bind-n-Seq	IGF2BP1		Yes	Released	2022-07-12	ENCODE3			8313
chris-burge:lib-IMP1-input-cntl	ENCLB406YDE	library	RNA Bind-n-Seq	IGF2BP1		Yes	Released	2022-07-12	ENCODE3			8314
chris-burge:lib-IMP1-mockPD-cntl	ENCLB436CNU	library	RNA Bind-n-Seq	IGF2BP1		Yes	Released	2022-07-12	ENCODE3			8315
chris-burge:IGF2BP1_enrichment_R.5mers.CCC_CTCC_CACC_removed.txt	ENCFF157MJN	file_enrichment	RNA Bind-n-Seq	IGF2BP1		Yes	Released	2022-07-14	ENCODE3			9175
chris-burge:IGF2BP1_enrichment_R.6mers.CCC_CTCC_CACC_removed.txt	ENCFF493XXL	file_enrichment	RNA Bind-n-Seq	IGF2BP1		Yes	Released	2022-07-14	ENCODE3			9176
chris-burge:IGF2BP1_enrichment_R.7mers.CCC_CTCC_CACC_removed.txt	ENCFF232CHY	file_enrichment	RNA Bind-n-Seq	IGF2BP1		Yes	Released	2022-07-14	ENCODE3			9177
chris-burge:IGF2BP1_est_binding_frac.5mers.CCC_CTCC_CACC_removed.txt	ENCFF461NLU	file_library-fraction	RNA Bind-n-Seq	IGF2BP1		Yes	Released	2022-07-14	ENCODE3			9178
chris-burge:IGF2BP1_est_binding_frac.6mers.CCC_CTCC_CACC_removed.txt	ENCFF742YHB	file_library-fraction	RNA Bind-n-Seq	IGF2BP1		Yes	Released	2022-07-14	ENCODE3			9179
chris-burge:IGF2BP1_est_binding_frac.7mers.CCC_CTCC_CACC_removed.txt	ENCFF291VRH	file_library-fraction	RNA Bind-n-Seq	IGF2BP1		Yes	Released	2022-07-14	ENCODE3			9180
chris-burge:IMP1_80.fastq.gz	ENCFF002DGM	file_fastq	RNA Bind-n-Seq	IGF2BP1		Yes	Released	2022-07-14	ENCODE3			9639
chris-burge:IMP1_1300.fastq.gz	ENCFF002DGI	file_fastq	RNA Bind-n-Seq	IGF2BP1		Yes	Released	2022-07-14	ENCODE3			9640
chris-burge:IMP1_320.fastq.gz	ENCFF002DGK	file_fastq	RNA Bind-n-Seq	IGF2BP1		Yes	Released	2022-07-14	ENCODE3			9641
chris-burge:IMP1_5.fastq.gz	ENCFF002DGL	file_fastq	RNA Bind-n-Seq	IGF2BP1		Yes	Released	2022-07-14	ENCODE3			9642
chris-burge:IMP1_20.fastq.gz	ENCFF002DGJ	file_fastq	RNA Bind-n-Seq	IGF2BP1		Yes	Released	2022-07-14	ENCODE3			9643
chris-burge:IMP1_input.fastq.gz	ENCFF002DGN	file_fastq	RNA Bind-n-Seq	IGF2BP1		Yes	Released	2022-07-14	ENCODE3			9644
chris-burge:IMP1_0.fastq.gz	ENCFF002DGH	file_fastq	RNA Bind-n-Seq	IGF2BP1		Yes	Released	2022-07-14	ENCODE3			9645
chris-burge:HepG2.with_motif.IGF2BP1.bed.gz	ENCFF795EZC	file_bed	RNA Bind-n-Seq	IGF2BP1		Yes	Released	2022-07-14	ENCODE3			9726
chris-burge:K562.with_motif.IGF2BP1.bed.gz	ENCFF749TMN	file_bed	RNA Bind-n-Seq	IGF2BP1		Yes	Released	2022-07-14	ENCODE3			9727

File Information

file_name	file_format	output_type	assay_type	lab	derived_from	controlled_by	Project	Note
IGF2BP1.logo.png	png	document	RNA Bind-n-Seq	Burge Lab			ENCODE3
IMP1_0.fastq.gz	fastq	reads	RNA Bind-n-Seq	Burge Lab			ENCODE3
IMP1_1300.fastq.gz	fastq	reads	RNA Bind-n-Seq	Burge Lab		IMP1_0.fastq.gz,IMP1_input.fastq.gz	ENCODE3
IMP1_20.fastq.gz	fastq	reads	RNA Bind-n-Seq	Burge Lab		IMP1_0.fastq.gz,IMP1_input.fastq.gz	ENCODE3
IMP1_320.fastq.gz	fastq	reads	RNA Bind-n-Seq	Burge Lab		IMP1_0.fastq.gz,IMP1_input.fastq.gz	ENCODE3
IMP1_5.fastq.gz	fastq	reads	RNA Bind-n-Seq	Burge Lab		IMP1_0.fastq.gz,IMP1_input.fastq.gz	ENCODE3
IMP1_80.fastq.gz	fastq	reads	RNA Bind-n-Seq	Burge Lab		IMP1_0.fastq.gz,IMP1_input.fastq.gz	ENCODE3
IMP1_input.fastq.gz	fastq	reads	RNA Bind-n-Seq	Burge Lab			ENCODE3
IGF2BP1_enrichment_R.5mers.CCC_CTCC_CACC_removed.txt	tsv	enrichment	RNA Bind-n-Seq	Burge Lab	IMP1_0.fastq.gz,IMP1_1300.fastq.gz,IMP1_20.fastq.gz,IMP1_320.fastq.gz,IMP1_5.fastq.gz,IMP1_80.fastq.gz,IMP1_input.fastq.gz		ENCODE3
IGF2BP1_est_binding_frac.5mers.CCC_CTCC_CACC_removed.txt	tsv	enrichment	RNA Bind-n-Seq	Burge Lab	IMP1_0.fastq.gz,IMP1_1300.fastq.gz,IMP1_20.fastq.gz,IMP1_320.fastq.gz,IMP1_5.fastq.gz,IMP1_80.fastq.gz,IMP1_input.fastq.gz		ENCODE3
IGF2BP1_enrichment_R.6mers.CCC_CTCC_CACC_removed.txt	tsv	enrichment	RNA Bind-n-Seq	Burge Lab	IMP1_0.fastq.gz,IMP1_1300.fastq.gz,IMP1_20.fastq.gz,IMP1_320.fastq.gz,IMP1_5.fastq.gz,IMP1_80.fastq.gz,IMP1_input.fastq.gz		ENCODE3
IGF2BP1_est_binding_frac.6mers.CCC_CTCC_CACC_removed.txt	tsv	enrichment	RNA Bind-n-Seq	Burge Lab	IMP1_0.fastq.gz,IMP1_1300.fastq.gz,IMP1_20.fastq.gz,IMP1_320.fastq.gz,IMP1_5.fastq.gz,IMP1_80.fastq.gz,IMP1_input.fastq.gz		ENCODE3
IGF2BP1_enrichment_R.7mers.CCC_CTCC_CACC_removed.txt	tsv	enrichment	RNA Bind-n-Seq	Burge Lab	IMP1_0.fastq.gz,IMP1_1300.fastq.gz,IMP1_20.fastq.gz,IMP1_320.fastq.gz,IMP1_5.fastq.gz,IMP1_80.fastq.gz,IMP1_input.fastq.gz		ENCODE3
IGF2BP1_est_binding_frac.7mers.CCC_CTCC_CACC_removed.txt	tsv	enrichment	RNA Bind-n-Seq	Burge Lab	IMP1_0.fastq.gz,IMP1_1300.fastq.gz,IMP1_20.fastq.gz,IMP1_320.fastq.gz,IMP1_5.fastq.gz,IMP1_80.fastq.gz,IMP1_input.fastq.gz		ENCODE3
HepG2.with_motif.IGF2BP1.bed.gz	bed_RBNS	peaks	RNA Bind-n-Seq	Burge Lab	IGF2BP1_enrichment_R.5mers.CCC_CTCC_CACC_removed.txt,205.01v02.IDR.out.0102merged.bed.blacklist_removed.bed.narrowPeak.encode.bed.gz		ENCODE3
K562.with_motif.IGF2BP1.bed.gz	bed_RBNS	peaks	RNA Bind-n-Seq	Burge Lab	IGF2BP1_enrichment_R.5mers.CCC_CTCC_CACC_removed.txt,220.01v02.IDR.out.0102merged.bed.blacklist_removed.bed.narrowPeak.encode.bed.gz		ENCODE3