Experiment Information (Status: Released)

RBP	HNRNPL
gene_aliases
Status	Released
Status_date	2022-07-15
Project	ENCODE3
Note
ID	91

Motif Logo

Sample Information

Sample_Name	Sample_Type	Read_size_range	rbns_protein_concentration	FILE_ID
HNRNPL-1300	RBNS	20-20	1300	HNRNPL_1300.fastq.gz
HNRNPL-20	RBNS	20-20	20	HNRNPL_20.fastq.gz
HNRNPL-320	RBNS	20-20	320	HNRNPL_320.fastq.gz
HNRNPL-5	RBNS	20-20	5	HNRNPL_5.fastq.gz
HNRNPL-80	RBNS	20-20	80	HNRNPL_80.fastq.gz
HNRNPL-input	CN	20-20	0	HNRNPL_input.fastq.gz

Data Submission Information

ENCODE_alias	ENCODE_accession	object_type	assay_type	Sample_ID	SAMPLENAMEID	Selected	Status	Status_Date	Project	protocol_folder	protocol_file_name	ID
chris-burge:HNRNPL	ENCSR954TYO	experiment	RNA Bind-n-Seq	HNRNPL		Yes	Released	2022-07-12	ENCODE3			8039
chris-burge:lib-HNRNPL-1	ENCLB259LVT	library	RNA Bind-n-Seq	HNRNPL		Yes	Released	2022-07-12	ENCODE3			8291
chris-burge:lib-HNRNPL-2	ENCLB042QUY	library	RNA Bind-n-Seq	HNRNPL		Yes	Released	2022-07-12	ENCODE3			8292
chris-burge:lib-HNRNPL-3	ENCLB139LGX	library	RNA Bind-n-Seq	HNRNPL		Yes	Released	2022-07-12	ENCODE3			8293
chris-burge:lib-HNRNPL-4	ENCLB467TCI	library	RNA Bind-n-Seq	HNRNPL		Yes	Released	2022-07-12	ENCODE3			8294
chris-burge:lib-HNRNPL-5	ENCLB336LHQ	library	RNA Bind-n-Seq	HNRNPL		Yes	Released	2022-07-12	ENCODE3			8295
chris-burge:HNRNPL_1300.fastq.gz	ENCFF929YDP	file_fastq	RNA Bind-n-Seq	HNRNPL		Yes	Released	2022-07-14	ENCODE3			8729
chris-burge:HNRNPL_20.fastq.gz	ENCFF004ECZ	file_fastq	RNA Bind-n-Seq	HNRNPL		Yes	Released	2022-07-14	ENCODE3			8730
chris-burge:HNRNPL_320.fastq.gz	ENCFF407TKA	file_fastq	RNA Bind-n-Seq	HNRNPL		Yes	Released	2022-07-14	ENCODE3			8731
chris-burge:HNRNPL_5.fastq.gz	ENCFF086FCD	file_fastq	RNA Bind-n-Seq	HNRNPL		Yes	Released	2022-07-14	ENCODE3			8732
chris-burge:HNRNPL_80.fastq.gz	ENCFF066AFW	file_fastq	RNA Bind-n-Seq	HNRNPL		Yes	Released	2022-07-14	ENCODE3			8733
chris-burge:HNRNPL_enrichment_R.4mers.txt	ENCFF262PXW	file_enrichment	RNA Bind-n-Seq	HNRNPL		Yes	Released	2022-07-14	ENCODE3			9167
chris-burge:HNRNPL_enrichment_R.5mers.txt	ENCFF422OAC	file_enrichment	RNA Bind-n-Seq	HNRNPL		Yes	Released	2022-07-14	ENCODE3			9168
chris-burge:HNRNPL_enrichment_R.6mers.txt	ENCFF029EII	file_enrichment	RNA Bind-n-Seq	HNRNPL		Yes	Released	2022-07-14	ENCODE3			9169
chris-burge:HNRNPL_enrichment_R.7mers.txt	ENCFF941VVI	file_enrichment	RNA Bind-n-Seq	HNRNPL		Yes	Released	2022-07-14	ENCODE3			9170
chris-burge:HNRNPL_est_binding_frac.4mers.txt	ENCFF640IUJ	file_library-fraction	RNA Bind-n-Seq	HNRNPL		Yes	Released	2022-07-14	ENCODE3			9171
chris-burge:HNRNPL_est_binding_frac.5mers.txt	ENCFF044BEP	file_library-fraction	RNA Bind-n-Seq	HNRNPL		Yes	Released	2022-07-14	ENCODE3			9172
chris-burge:HNRNPL_est_binding_frac.6mers.txt	ENCFF035BST	file_library-fraction	RNA Bind-n-Seq	HNRNPL		Yes	Released	2022-07-14	ENCODE3			9173
chris-burge:HNRNPL_est_binding_frac.7mers.txt	ENCFF410KFS	file_library-fraction	RNA Bind-n-Seq	HNRNPL		Yes	Released	2022-07-14	ENCODE3			9174
chris-burge:HepG2.with_motif.HNRNPL.bed.gz	ENCFF117QKP	file_bed	RNA Bind-n-Seq	HNRNPL		Yes	Released	2022-07-14	ENCODE3			9724
chris-burge:K562.with_motif.HNRNPL.bed.gz	ENCFF134FRX	file_bed	RNA Bind-n-Seq	HNRNPL		Yes	Released	2022-07-14	ENCODE3			9725

File Information

file_name	file_format	output_type	assay_type	lab	derived_from	controlled_by	Project	Note
HNRNPL.logo.png	png	document	RNA Bind-n-Seq	Burge Lab			ENCODE3
HNRNPL_1300.fastq.gz	fastq	reads	RNA Bind-n-Seq	Burge Lab		SF1_input.fastq.gz	ENCODE3
HNRNPL_20.fastq.gz	fastq	reads	RNA Bind-n-Seq	Burge Lab		SF1_input.fastq.gz	ENCODE3
HNRNPL_320.fastq.gz	fastq	reads	RNA Bind-n-Seq	Burge Lab		SF1_input.fastq.gz	ENCODE3
HNRNPL_5.fastq.gz	fastq	reads	RNA Bind-n-Seq	Burge Lab		SF1_input.fastq.gz	ENCODE3
HNRNPL_80.fastq.gz	fastq	reads	RNA Bind-n-Seq	Burge Lab		SF1_input.fastq.gz	ENCODE3
HNRNPL_input.fastq.gz	fastq	reads	RNA Bind-n-Seq	Burge Lab			ENCODE3
HNRNPL_enrichment_R.4mers.txt	tsv	enrichment	RNA Bind-n-Seq	Burge Lab	HNRNPL_1300.fastq.gz,HNRNPL_20.fastq.gz,HNRNPL_320.fastq.gz,HNRNPL_5.fastq.gz,HNRNPL_80.fastq.gz,SF1_input.fastq.gz		ENCODE3
HNRNPL_est_binding_frac.4mers.txt	tsv	enrichment	RNA Bind-n-Seq	Burge Lab	HNRNPL_1300.fastq.gz,HNRNPL_20.fastq.gz,HNRNPL_320.fastq.gz,HNRNPL_5.fastq.gz,HNRNPL_80.fastq.gz,SF1_input.fastq.gz		ENCODE3
HNRNPL_enrichment_R.5mers.txt	tsv	enrichment	RNA Bind-n-Seq	Burge Lab	HNRNPL_1300.fastq.gz,HNRNPL_20.fastq.gz,HNRNPL_320.fastq.gz,HNRNPL_5.fastq.gz,HNRNPL_80.fastq.gz,SF1_input.fastq.gz		ENCODE3
HNRNPL_est_binding_frac.5mers.txt	tsv	enrichment	RNA Bind-n-Seq	Burge Lab	HNRNPL_1300.fastq.gz,HNRNPL_20.fastq.gz,HNRNPL_320.fastq.gz,HNRNPL_5.fastq.gz,HNRNPL_80.fastq.gz,SF1_input.fastq.gz		ENCODE3
HNRNPL_enrichment_R.6mers.txt	tsv	enrichment	RNA Bind-n-Seq	Burge Lab	HNRNPL_1300.fastq.gz,HNRNPL_20.fastq.gz,HNRNPL_320.fastq.gz,HNRNPL_5.fastq.gz,HNRNPL_80.fastq.gz,SF1_input.fastq.gz		ENCODE3
HNRNPL_est_binding_frac.6mers.txt	tsv	enrichment	RNA Bind-n-Seq	Burge Lab	HNRNPL_1300.fastq.gz,HNRNPL_20.fastq.gz,HNRNPL_320.fastq.gz,HNRNPL_5.fastq.gz,HNRNPL_80.fastq.gz,SF1_input.fastq.gz		ENCODE3
HNRNPL_enrichment_R.7mers.txt	tsv	enrichment	RNA Bind-n-Seq	Burge Lab	HNRNPL_1300.fastq.gz,HNRNPL_20.fastq.gz,HNRNPL_320.fastq.gz,HNRNPL_5.fastq.gz,HNRNPL_80.fastq.gz,SF1_input.fastq.gz		ENCODE3
HNRNPL_est_binding_frac.7mers.txt	tsv	enrichment	RNA Bind-n-Seq	Burge Lab	HNRNPL_1300.fastq.gz,HNRNPL_20.fastq.gz,HNRNPL_320.fastq.gz,HNRNPL_5.fastq.gz,HNRNPL_80.fastq.gz,SF1_input.fastq.gz		ENCODE3
K562.with_motif.HNRNPL.bed.gz	bed_RBNS	peaks	RNA Bind-n-Seq	Burge Lab	HNRNPL_enrichment_R.5mers.txt,560.01v02.IDR.out.0102merged.bed.blacklist_removed.bed.narrowPeak.encode.bed.gz		ENCODE3
HepG2.with_motif.HNRNPL.bed.gz	bed_RBNS	peaks	RNA Bind-n-Seq	Burge Lab	HNRNPL_enrichment_R.5mers.txt,678.01v02.IDR.out.0102merged.bed.blacklist_removed.bed.narrowPeak.encode.bed.gz		ENCODE3