Experiment Information (Status: Released)

RBP	HNRNPCL1
gene_aliases
Status	Released
Status_date	2022-07-15
Project	ENCODE3
Note
ID	28

Motif Logo

Sample Information

Sample_Name	Sample_Type	Read_size_range	rbns_protein_concentration	FILE_ID
HNRNPCL1-1300	RBNS	20-20	1300	HNRNPCL1_1300.fastq.gz
HNRNPCL1-20	RBNS	20-20	20	HNRNPCL1_20.fastq.gz
HNRNPCL1-320	RBNS	20-20	320	HNRNPCL1_320.fastq.gz
HNRNPCL1-5	RBNS	20-20	5	HNRNPCL1_5.fastq.gz
HNRNPCL1-80	RBNS	20-20	80	HNRNPCL1_80.fastq.gz
HNRNPCL1-input	CN	20-20	0	HNRNPCL1_input.fastq.gz

Data Submission Information

ENCODE_alias	ENCODE_accession	object_type	assay_type	Sample_ID	SAMPLENAMEID	Selected	Status	Status_Date	Project	protocol_folder	protocol_file_name	ID
chris-burge:HNRNPCL1	ENCSR915CDT	experiment	RNA Bind-n-Seq	HNRNPCL1		Yes	Released	2022-07-12	ENCODE3			8025
chris-burge:lib-HNRNPCL1-1	ENCLB739DFN	library	RNA Bind-n-Seq	HNRNPCL1		Yes	Released	2022-07-12	ENCODE3			8253
chris-burge:lib-HNRNPCL1-2	ENCLB102CYQ	library	RNA Bind-n-Seq	HNRNPCL1		Yes	Released	2022-07-12	ENCODE3			8254
chris-burge:lib-HNRNPCL1-3	ENCLB342OQD	library	RNA Bind-n-Seq	HNRNPCL1		Yes	Released	2022-07-12	ENCODE3			8255
chris-burge:lib-HNRNPCL1-4	ENCLB723OLQ	library	RNA Bind-n-Seq	HNRNPCL1		Yes	Released	2022-07-12	ENCODE3			8256
chris-burge:lib-HNRNPCL1-5	ENCLB975GAP	library	RNA Bind-n-Seq	HNRNPCL1		Yes	Released	2022-07-12	ENCODE3			8257
chris-burge:HNRNPCL1_1300.fastq.gz	ENCFF442IBY	file_fastq	RNA Bind-n-Seq	HNRNPCL1		Yes	Released	2022-07-14	ENCODE3			8712
chris-burge:HNRNPCL1_20.fastq.gz	ENCFF729PSS	file_fastq	RNA Bind-n-Seq	HNRNPCL1		Yes	Released	2022-07-14	ENCODE3			8713
chris-burge:HNRNPCL1_320.fastq.gz	ENCFF963SCO	file_fastq	RNA Bind-n-Seq	HNRNPCL1		Yes	Released	2022-07-14	ENCODE3			8714
chris-burge:HNRNPCL1_5.fastq.gz	ENCFF316GAF	file_fastq	RNA Bind-n-Seq	HNRNPCL1		Yes	Released	2022-07-14	ENCODE3			8715
chris-burge:HNRNPCL1_80.fastq.gz	ENCFF150PUV	file_fastq	RNA Bind-n-Seq	HNRNPCL1		Yes	Released	2022-07-14	ENCODE3			8716
chris-burge:HNRNPCL1_enrichment_R.4mers.txt	ENCFF749DDH	file_enrichment	RNA Bind-n-Seq	HNRNPCL1		Yes	Released	2022-07-14	ENCODE3			9138
chris-burge:HNRNPCL1_enrichment_R.5mers.txt	ENCFF015VSF	file_enrichment	RNA Bind-n-Seq	HNRNPCL1		Yes	Released	2022-07-14	ENCODE3			9139
chris-burge:HNRNPCL1_enrichment_R.6mers.txt	ENCFF576WAA	file_enrichment	RNA Bind-n-Seq	HNRNPCL1		Yes	Released	2022-07-14	ENCODE3			9140
chris-burge:HNRNPCL1_enrichment_R.7mers.txt	ENCFF732SOC	file_enrichment	RNA Bind-n-Seq	HNRNPCL1		Yes	Released	2022-07-14	ENCODE3			9141
chris-burge:HNRNPCL1_est_binding_frac.4mers.txt	ENCFF869NLN	file_library-fraction	RNA Bind-n-Seq	HNRNPCL1		Yes	Released	2022-07-14	ENCODE3			9142
chris-burge:HNRNPCL1_est_binding_frac.5mers.txt	ENCFF820QTJ	file_library-fraction	RNA Bind-n-Seq	HNRNPCL1		Yes	Released	2022-07-14	ENCODE3			9143
chris-burge:HNRNPCL1_est_binding_frac.6mers.txt	ENCFF063VPS	file_library-fraction	RNA Bind-n-Seq	HNRNPCL1		Yes	Released	2022-07-14	ENCODE3			9144
chris-burge:HNRNPCL1_est_binding_frac.7mers.txt	ENCFF171EIR	file_library-fraction	RNA Bind-n-Seq	HNRNPCL1		Yes	Released	2022-07-14	ENCODE3			9145
chris-burge:HNRNPCL1.logo_1.PWM.txt	ENCFF072KMO	file_enrichment	RNA Bind-n-Seq	HNRNPCL1		Yes	Released	2022-07-14	ENCODE3			9146

File Information

file_name	file_format	output_type	assay_type	lab	derived_from	controlled_by	Project	Note
HNRNPCL1.logo.png	png	document	RNA Bind-n-Seq	Burge Lab			ENCODE3
HNRNPCL1_1300.fastq.gz	fastq	reads	RNA Bind-n-Seq	Burge Lab		DAZ3_input.fastq.gz	ENCODE3
HNRNPCL1_20.fastq.gz	fastq	reads	RNA Bind-n-Seq	Burge Lab		DAZ3_input.fastq.gz	ENCODE3
HNRNPCL1_320.fastq.gz	fastq	reads	RNA Bind-n-Seq	Burge Lab		DAZ3_input.fastq.gz	ENCODE3
HNRNPCL1_5.fastq.gz	fastq	reads	RNA Bind-n-Seq	Burge Lab		DAZ3_input.fastq.gz	ENCODE3
HNRNPCL1_80.fastq.gz	fastq	reads	RNA Bind-n-Seq	Burge Lab		DAZ3_input.fastq.gz	ENCODE3
HNRNPCL1_input.fastq.gz	fastq	reads	RNA Bind-n-Seq	Burge Lab			ENCODE3
HNRNPCL1_enrichment_R.4mers.txt	tsv	enrichment	RNA Bind-n-Seq	Burge Lab	HNRNPCL1_1300.fastq.gz,HNRNPCL1_20.fastq.gz,HNRNPCL1_320.fastq.gz,HNRNPCL1_5.fastq.gz,HNRNPCL1_80.fastq.gz,DAZ3_input.fastq.gz		ENCODE3
HNRNPCL1_est_binding_frac.4mers.txt	tsv	enrichment	RNA Bind-n-Seq	Burge Lab	HNRNPCL1_1300.fastq.gz,HNRNPCL1_20.fastq.gz,HNRNPCL1_320.fastq.gz,HNRNPCL1_5.fastq.gz,HNRNPCL1_80.fastq.gz,DAZ3_input.fastq.gz		ENCODE3
HNRNPCL1_enrichment_R.5mers.txt	tsv	enrichment	RNA Bind-n-Seq	Burge Lab	HNRNPCL1_1300.fastq.gz,HNRNPCL1_20.fastq.gz,HNRNPCL1_320.fastq.gz,HNRNPCL1_5.fastq.gz,HNRNPCL1_80.fastq.gz,DAZ3_input.fastq.gz		ENCODE3
HNRNPCL1_est_binding_frac.5mers.txt	tsv	enrichment	RNA Bind-n-Seq	Burge Lab	HNRNPCL1_1300.fastq.gz,HNRNPCL1_20.fastq.gz,HNRNPCL1_320.fastq.gz,HNRNPCL1_5.fastq.gz,HNRNPCL1_80.fastq.gz,DAZ3_input.fastq.gz		ENCODE3
HNRNPCL1_enrichment_R.6mers.txt	tsv	enrichment	RNA Bind-n-Seq	Burge Lab	HNRNPCL1_1300.fastq.gz,HNRNPCL1_20.fastq.gz,HNRNPCL1_320.fastq.gz,HNRNPCL1_5.fastq.gz,HNRNPCL1_80.fastq.gz,DAZ3_input.fastq.gz		ENCODE3
HNRNPCL1_est_binding_frac.6mers.txt	tsv	enrichment	RNA Bind-n-Seq	Burge Lab	HNRNPCL1_1300.fastq.gz,HNRNPCL1_20.fastq.gz,HNRNPCL1_320.fastq.gz,HNRNPCL1_5.fastq.gz,HNRNPCL1_80.fastq.gz,DAZ3_input.fastq.gz		ENCODE3
HNRNPCL1_enrichment_R.7mers.txt	tsv	enrichment	RNA Bind-n-Seq	Burge Lab	HNRNPCL1_1300.fastq.gz,HNRNPCL1_20.fastq.gz,HNRNPCL1_320.fastq.gz,HNRNPCL1_5.fastq.gz,HNRNPCL1_80.fastq.gz,DAZ3_input.fastq.gz		ENCODE3
HNRNPCL1_est_binding_frac.7mers.txt	tsv	enrichment	RNA Bind-n-Seq	Burge Lab	HNRNPCL1_1300.fastq.gz,HNRNPCL1_20.fastq.gz,HNRNPCL1_320.fastq.gz,HNRNPCL1_5.fastq.gz,HNRNPCL1_80.fastq.gz,DAZ3_input.fastq.gz		ENCODE3