Experiment Information (Status: Released)

RBP	CPEB1
gene_aliases
Status	Released
Status_date	2022-07-15
Project	ENCODE3
Note
ID	76

Motif Logo

Sample Information

Sample_Name	Sample_Type	Read_size_range	rbns_protein_concentration	FILE_ID
CPEB1-1300	RBNS	20-20	1300	CPEB1_1300.fastq.gz
CPEB1-20	RBNS	20-20	20	CPEB1_20.fastq.gz
CPEB1-320	RBNS	20-20	320	CPEB1_320.fastq.gz
CPEB1-5	RBNS	20-20	5	CPEB1_5.fastq.gz
CPEB1-80	RBNS	20-20	80	CPEB1_80.fastq.gz
CPEB1-input	CN	20-20	0	CPEB1_input.fastq.gz

Data Submission Information

ENCODE_alias	ENCODE_accession	object_type	assay_type	Sample_ID	SAMPLENAMEID	Selected	Status	Status_Date	Project	protocol_folder	protocol_file_name	ID
chris-burge:CPEB1	ENCSR084YCO	experiment	RNA Bind-n-Seq	CPEB1		Yes	Released	2022-07-12	ENCODE3			7997
chris-burge:CPEB1-input-cntl	ENCSR640ADB	experiment	RNA Bind-n-Seq	CPEB1		Yes	Released	2022-07-12	ENCODE3			7998
chris-burge:lib-CPEB1-1	ENCLB628PYJ	library	RNA Bind-n-Seq	CPEB1		Yes	Released	2022-07-12	ENCODE3			8174
chris-burge:lib-CPEB1-2	ENCLB640XLD	library	RNA Bind-n-Seq	CPEB1		Yes	Released	2022-07-12	ENCODE3			8175
chris-burge:lib-CPEB1-3	ENCLB050KJW	library	RNA Bind-n-Seq	CPEB1		Yes	Released	2022-07-12	ENCODE3			8176
chris-burge:lib-CPEB1-4	ENCLB946OUY	library	RNA Bind-n-Seq	CPEB1		Yes	Released	2022-07-12	ENCODE3			8177
chris-burge:lib-CPEB1-5	ENCLB111IYG	library	RNA Bind-n-Seq	CPEB1		Yes	Released	2022-07-12	ENCODE3			8178
chris-burge:lib-CPEB1-input-cntl	ENCLB135UMS	library	RNA Bind-n-Seq	CPEB1		Yes	Released	2022-07-12	ENCODE3			8179
chris-burge:CPEB1_1300.fastq.gz	ENCFF013YVD	file_fastq	RNA Bind-n-Seq	CPEB1		Yes	Released	2022-07-14	ENCODE3			8647
chris-burge:CPEB1_20.fastq.gz	ENCFF859RIY	file_fastq	RNA Bind-n-Seq	CPEB1		Yes	Released	2022-07-14	ENCODE3			8648
chris-burge:CPEB1_320.fastq.gz	ENCFF808XIS	file_fastq	RNA Bind-n-Seq	CPEB1		Yes	Released	2022-07-14	ENCODE3			8649
chris-burge:CPEB1_5.fastq.gz	ENCFF960JKZ	file_fastq	RNA Bind-n-Seq	CPEB1		Yes	Released	2022-07-14	ENCODE3			8650
chris-burge:CPEB1_80.fastq.gz	ENCFF903JOE	file_fastq	RNA Bind-n-Seq	CPEB1		Yes	Released	2022-07-14	ENCODE3			8651
chris-burge:CPEB1_input.fastq.gz	ENCFF214QKC	file_fastq	RNA Bind-n-Seq	CPEB1		Yes	Released	2022-07-14	ENCODE3			8652
chris-burge:CPEB1_enrichment_R.4mers.txt	ENCFF884AFI	file_enrichment	RNA Bind-n-Seq	CPEB1		Yes	Released	2022-07-14	ENCODE3			9035
chris-burge:CPEB1_enrichment_R.5mers.txt	ENCFF745KUY	file_enrichment	RNA Bind-n-Seq	CPEB1		Yes	Released	2022-07-14	ENCODE3			9036
chris-burge:CPEB1_enrichment_R.6mers.txt	ENCFF473SQY	file_enrichment	RNA Bind-n-Seq	CPEB1		Yes	Released	2022-07-14	ENCODE3			9037
chris-burge:CPEB1_enrichment_R.7mers.txt	ENCFF313SEU	file_enrichment	RNA Bind-n-Seq	CPEB1		Yes	Released	2022-07-14	ENCODE3			9038
chris-burge:CPEB1_est_binding_frac.4mers.txt	ENCFF604BFV	file_library-fraction	RNA Bind-n-Seq	CPEB1		Yes	Released	2022-07-14	ENCODE3			9039
chris-burge:CPEB1_est_binding_frac.5mers.txt	ENCFF734WNH	file_library-fraction	RNA Bind-n-Seq	CPEB1		Yes	Released	2022-07-14	ENCODE3			9040
chris-burge:CPEB1_est_binding_frac.6mers.txt	ENCFF670HNQ	file_library-fraction	RNA Bind-n-Seq	CPEB1		Yes	Released	2022-07-14	ENCODE3			9041
chris-burge:CPEB1_est_binding_frac.7mers.txt	ENCFF742NAC	file_library-fraction	RNA Bind-n-Seq	CPEB1		Yes	Released	2022-07-14	ENCODE3			9042
chris-burge:CPEB1.logo_1.PWM.txt	ENCFF487PLP	file_enrichment	RNA Bind-n-Seq	CPEB1		Yes	Released	2022-07-14	ENCODE3			9043

File Information

file_name	file_format	output_type	assay_type	lab	derived_from	controlled_by	Project	Note
CPEB1.logo.png	png	document	RNA Bind-n-Seq	Burge Lab			ENCODE3
CPEB1_1300.fastq.gz	fastq	reads	RNA Bind-n-Seq	Burge Lab		CPEB1_input.fastq.gz	ENCODE3
CPEB1_20.fastq.gz	fastq	reads	RNA Bind-n-Seq	Burge Lab		CPEB1_input.fastq.gz	ENCODE3
CPEB1_320.fastq.gz	fastq	reads	RNA Bind-n-Seq	Burge Lab		CPEB1_input.fastq.gz	ENCODE3
CPEB1_5.fastq.gz	fastq	reads	RNA Bind-n-Seq	Burge Lab		CPEB1_input.fastq.gz	ENCODE3
CPEB1_80.fastq.gz	fastq	reads	RNA Bind-n-Seq	Burge Lab		CPEB1_input.fastq.gz	ENCODE3
CPEB1_input.fastq.gz	fastq	reads	RNA Bind-n-Seq	Burge Lab			ENCODE3
CPEB1_enrichment_R.4mers.txt	tsv	enrichment	RNA Bind-n-Seq	Burge Lab	CPEB1_1300.fastq.gz,CPEB1_20.fastq.gz,CPEB1_320.fastq.gz,CPEB1_5.fastq.gz,CPEB1_80.fastq.gz,CPEB1_input.fastq.gz		ENCODE3
CPEB1_est_binding_frac.4mers.txt	tsv	enrichment	RNA Bind-n-Seq	Burge Lab	CPEB1_1300.fastq.gz,CPEB1_20.fastq.gz,CPEB1_320.fastq.gz,CPEB1_5.fastq.gz,CPEB1_80.fastq.gz,CPEB1_input.fastq.gz		ENCODE3
CPEB1_enrichment_R.5mers.txt	tsv	enrichment	RNA Bind-n-Seq	Burge Lab	CPEB1_1300.fastq.gz,CPEB1_20.fastq.gz,CPEB1_320.fastq.gz,CPEB1_5.fastq.gz,CPEB1_80.fastq.gz,CPEB1_input.fastq.gz		ENCODE3
CPEB1_est_binding_frac.5mers.txt	tsv	enrichment	RNA Bind-n-Seq	Burge Lab	CPEB1_1300.fastq.gz,CPEB1_20.fastq.gz,CPEB1_320.fastq.gz,CPEB1_5.fastq.gz,CPEB1_80.fastq.gz,CPEB1_input.fastq.gz		ENCODE3
CPEB1_enrichment_R.6mers.txt	tsv	enrichment	RNA Bind-n-Seq	Burge Lab	CPEB1_1300.fastq.gz,CPEB1_20.fastq.gz,CPEB1_320.fastq.gz,CPEB1_5.fastq.gz,CPEB1_80.fastq.gz,CPEB1_input.fastq.gz		ENCODE3
CPEB1_est_binding_frac.6mers.txt	tsv	enrichment	RNA Bind-n-Seq	Burge Lab	CPEB1_1300.fastq.gz,CPEB1_20.fastq.gz,CPEB1_320.fastq.gz,CPEB1_5.fastq.gz,CPEB1_80.fastq.gz,CPEB1_input.fastq.gz		ENCODE3
CPEB1_enrichment_R.7mers.txt	tsv	enrichment	RNA Bind-n-Seq	Burge Lab	CPEB1_1300.fastq.gz,CPEB1_20.fastq.gz,CPEB1_320.fastq.gz,CPEB1_5.fastq.gz,CPEB1_80.fastq.gz,CPEB1_input.fastq.gz		ENCODE3
CPEB1_est_binding_frac.7mers.txt	tsv	enrichment	RNA Bind-n-Seq	Burge Lab	CPEB1_1300.fastq.gz,CPEB1_20.fastq.gz,CPEB1_320.fastq.gz,CPEB1_5.fastq.gz,CPEB1_80.fastq.gz,CPEB1_input.fastq.gz		ENCODE3