non-target      CRISPR in K562      Control: NT-BGKcLV46-1B,NT-BGKcLV46-2B

General Information

List KD experiments controlled by BGKcLV46-1 and BGKcLV46-2


NT-BGKcLV46-1,NT-BGKcLV46-2:
  • CHMP7-BGKcLV46-K562
  • COPB1-BGKcLV46-K562
  • DENR-BGKcLV46-K562
  • DIS3-BGKcLV46-K562
  • EED-BGKcLV46-K562
  • EIF3K-BGKcLV46-K562
  • EIF4B-BGKcLV46-K562
  • IARS-BGKcLV46-K562
  • MARS-BGKcLV46-K562
  • NXF1-BGKcLV46-K562
  • RBM12-BGKcLV46-K562
  • REXO2-BGKcLV46-K562
  • RPL4-BGKcLV46-K562
  • RPL5-BGKcLV46-K562
  • RPL7-BGKcLV46-K562
  • RPS12-BGKcLV46-K562
  • RPS19-BGKcLV46-K562
  • RRP8-BGKcLV46-K562
  • RUVBL2-BGKcLV46-K562
  • SYMPK-BGKcLV46-K562
  • TFRC-BGKcLV46-K562
  • YTHDC1-BGKcLV46-K562

    • NT-BGKcLV46-1B,NT-BGKcLV46-2B:
  • RPS9-BGKcLV46-K562




    • Experiment Information (Status: Submitting)
    BGKcLV46-1BGKcLV46-2
    idx00
    TRCN#_or_BGC#
    shRNA_or_gRNA_sequence
    PAM
    Namenon-targetnon-target
    Sample_IDBGKcLV46-1BGKcLV46-2
    transduction_Date12/20/2412/20/24
    daysD6D6
    RBP_namenon-targetnon-target
    qPCR_result
    Ave_qPCR
    RT-qPCR_primer-F
    RT-qPCR_primer-R
    protein_conc03450
    WB_result
    Ave_WB
    WB_DONE_date
    MW
    IP
    antibody_Cat#
    Antibody DCC ID
    submitted_to_DCC_date
    Rep1_TPM00
    Rep2_TPM00
    ActionReadyReady
    Library_start_date
    repeat_library
    Note
    ID59875988




    Western Blot
    Western Blot info was not avaliable




    Experiment Status
    BGKcLV46-1BGKcLV46-1BGKcLV46-2BGKcLV46-2
    Sample_IDBGKcLV46-1BGKcLV46-1BGKcLV46-2BGKcLV46-2
    Sample Name
    Sample NameNT-BGKcLV46-1NT-BGKcLV46-1NT-BGKcLV46-2NT-BGKcLV46-2
    RBPnon-targetnon-targetnon-targetnon-target
    Cell_LineK562K562K562K562
    Exp UID
    StatusSubmittingSubmittingSubmittingSubmitting
    Status_date2025-04-212025-04-212025-04-212025-04-21
    ProjectENCORE2ENCORE2ENCORE2ENCORE2
    Note
    ID14022141441402314145




    Library-Prep Information
    BGKcLV46-1BGKcLV46-1BGKcLV46-2BGKcLV46-2
    Sample #149250
    Sample NameNT-BGKcLV46-1NT-BGKcLV46-1BNT-BGKcLV46-2NT-BGKcLV46-2B
    Sample_Name_Alias
    Index Well PositionA01A07B01B07
    Index_tableIDT_UniqueDualIndex_96_V2IDT_UniqueDualIndex_96_V2IDT_UniqueDualIndex_96_V2IDT_UniqueDualIndex_96_V2
    LibPrep_date2025-02-202025-02-20
    Lib_IDLib-250220Lib-250220
    Tecan_Location
    Tecan
    Tecan_date
    Size_bp297288292286
    Peak_Molarity72.9056.3072.5053.60
    libSampleQC_DNA_WellDNA_Library_set77/set1/A7.pngDNA_Library_set77/set2/A9.pngDNA_Library_set77/set1/B7.pngDNA_Library_set77/set2/B9.png
    RIN9.89.89.69.6
    libSample_RNA_WellRNA_Library_set77/set1/A1.pngRNA_Library_set77/set1/A1.pngRNA_Library_set77/set1/B1.pngRNA_Library_set77/set1/B1.png
    SampleQC_methodTapeStation_2022TapeStation_2022TapeStation_2022TapeStation_2022
    SampleQC_date2025-02-282025-03-042025-02-282025-03-04
    Sample_IDBGKcLV46-1BGKcLV46-1BGKcLV46-2BGKcLV46-2
    RBPNTNTNTNT
    Batch_IDBGKcLV46BGKcLV46BGKcLV46BGKcLV46
    WB_result0.0000.0000.0000.000
    Library DescriptionTruSeq mRNATruSeq mRNATruSeq mRNATruSeq mRNA
    Repeat_Library_SuffixBB
    Lib_StatusSendToSequenceSendToSequenceSendToSequenceSendToSequence
    ProjectENCORE2ENCORE2ENCORE2ENCORE2
    ID4660470846614709




    Sequencing Information
    BGKcLV46-1BGKcLV46-1BGKcLV46-2BGKcLV46-2
    Sample_IDBGKcLV46-1BGKcLV46-1BGKcLV46-2BGKcLV46-2
    Sample NameNT-BGKcLV46-1NT-BGKcLV46-1BNT-BGKcLV46-2NT-BGKcLV46-2B
    Pool IDPool-250312Pool-250312Pool-250312Pool-250312
    LocalServer_folderset77set77set77set77
    total_reads49,566,75549,998,39350,364,89949,636,539
    total_aligned_reads45,326,20044,471,90245,088,27843,937,058
    unique_aligned_reads41,614,09440,782,52441,405,35540,249,628
    percent_uniqueAligned0.839560.815680.822110.81089
    correlation_replicates0.9990830.9988650.9990830.998865
    spikein_reads139,52067,566175,49665,622
    percent_spikeins0.002810.001350.003480.00132
    original_ReadLength101101101101
    QC_StatusSubmittingSubmittingSubmittingSubmitting
    ID3365341133663412




    Data Submission Information
    DCC submission information was not avaliable




    File Information
    file_namefile_pathfile_formatoutput_typeassay_typelabSample IDplatformread_lengthrun_typepaired_endassemblygenome_annotationderived_fromcontrolled_byProjectNoteFILE_ID
    NT-BGKcLV46-1B_S47_L001_R1_001.filtered.trimmed.paired.fastq.gzENCODE_DATA/set77/fastq_trimmedfastqreadsknockdown followed by RNA-seqGraveley Lab3411NovaSeq6000100paired-ended1ENCORE232166
    NT-BGKcLV46-1_S1_L001_R1_001.filtered.trimmed.paired.fastq.gzENCODE_DATA/set77/fastq_trimmedfastqreadsknockdown followed by RNA-seqGraveley Lab3365NovaSeq6000100paired-ended1ENCORE232167
    NT-BGKcLV46-1B_S47_L001_R2_001.filtered.trimmed.paired.fastq.gzENCODE_DATA/set77/fastq_trimmedfastqreadsknockdown followed by RNA-seqGraveley Lab3411NovaSeq6000100paired-ended2ENCORE232216
    NT-BGKcLV46-1_S1_L001_R2_001.filtered.trimmed.paired.fastq.gzENCODE_DATA/set77/fastq_trimmedfastqreadsknockdown followed by RNA-seqGraveley Lab3365NovaSeq6000100paired-ended2ENCORE232217
    NT-BGKcLV46-1B_Aligned.sortedByCoord.out.bamENCODE_DATA/set77/STAR_ENCORE2_trimmed_file_linksbamalignmentsknockdown followed by RNA-seqGraveley Lab3411GRCh38V40NT-BGKcLV46-1B_S47_L001_R1_001.filtered.trimmed.paired.fastq.gz,NT-BGKcLV46-1B_S47_L001_R2_001.filtered.trimmed.paired.fastq.gzENCORE232266
    NT-BGKcLV46-1_Aligned.sortedByCoord.out.bamENCODE_DATA/set77/STAR_ENCORE2_trimmed_file_linksbamalignmentsknockdown followed by RNA-seqGraveley Lab3365GRCh38V40NT-BGKcLV46-1_S1_L001_R1_001.filtered.trimmed.paired.fastq.gz,NT-BGKcLV46-1_S1_L001_R2_001.filtered.trimmed.paired.fastq.gzENCORE232267
    NT-BGKcLV46-1B_Signal.UniqueMultiple.strand-.bwENCODE_DATA/set77/STAR_ENCORE2_trimmed_file_linksbigWig-allminus strand signal of all readsknockdown followed by RNA-seqGraveley Lab3411GRCh38V40NT-BGKcLV46-1B_Aligned.sortedByCoord.out.bamENCORE232316
    NT-BGKcLV46-1_Signal.UniqueMultiple.strand-.bwENCODE_DATA/set77/STAR_ENCORE2_trimmed_file_linksbigWig-allminus strand signal of all readsknockdown followed by RNA-seqGraveley Lab3365GRCh38V40NT-BGKcLV46-1_Aligned.sortedByCoord.out.bamENCORE232317
    NT-BGKcLV46-1B_Signal.UniqueMultiple.strand+.bwENCODE_DATA/set77/STAR_ENCORE2_trimmed_file_linksbigWig+allplus strand signal of all readsknockdown followed by RNA-seqGraveley Lab3411GRCh38V40NT-BGKcLV46-1B_Aligned.sortedByCoord.out.bamENCORE232366
    NT-BGKcLV46-1_Signal.UniqueMultiple.strand+.bwENCODE_DATA/set77/STAR_ENCORE2_trimmed_file_linksbigWig+allplus strand signal of all readsknockdown followed by RNA-seqGraveley Lab3365GRCh38V40NT-BGKcLV46-1_Aligned.sortedByCoord.out.bamENCORE232367
    NT-BGKcLV46-1B_Signal.Unique.strand-.bwENCODE_DATA/set77/STAR_ENCORE2_trimmed_file_linksbigWig-uniqueminus strand signal of unique readsknockdown followed by RNA-seqGraveley Lab3411GRCh38V40NT-BGKcLV46-1B_Aligned.sortedByCoord.out.bamENCORE232416
    NT-BGKcLV46-1_Signal.Unique.strand-.bwENCODE_DATA/set77/STAR_ENCORE2_trimmed_file_linksbigWig-uniqueminus strand signal of unique readsknockdown followed by RNA-seqGraveley Lab3365GRCh38V40NT-BGKcLV46-1_Aligned.sortedByCoord.out.bamENCORE232417
    NT-BGKcLV46-1B_Signal.Unique.strand+.bwENCODE_DATA/set77/STAR_ENCORE2_trimmed_file_linksbigWig+uniqueplus strand signal of unique readsknockdown followed by RNA-seqGraveley Lab3411GRCh38V40NT-BGKcLV46-1B_Aligned.sortedByCoord.out.bamENCORE232466
    NT-BGKcLV46-1_Signal.Unique.strand+.bwENCODE_DATA/set77/STAR_ENCORE2_trimmed_file_linksbigWig+uniqueplus strand signal of unique readsknockdown followed by RNA-seqGraveley Lab3365GRCh38V40NT-BGKcLV46-1_Aligned.sortedByCoord.out.bamENCORE232467
    NT-BGKcLV46-1B_quant.sfENCODE_DATA/set77/salmon_ENCORE2_file_linkstranscript_quantificationtranscript quantificationsknockdown followed by RNA-seqGraveley Lab3411GRCh38V40NT-BGKcLV46-1B_S47_L001_R1_001.filtered.trimmed.paired.fastq.gz,NT-BGKcLV46-1B_S47_L001_R2_001.filtered.trimmed.paired.fastq.gzENCORE232516
    NT-BGKcLV46-1_quant.sfENCODE_DATA/set77/salmon_ENCORE2_file_linkstranscript_quantificationtranscript quantificationsknockdown followed by RNA-seqGraveley Lab3365GRCh38V40NT-BGKcLV46-1_S1_L001_R1_001.filtered.trimmed.paired.fastq.gz,NT-BGKcLV46-1_S1_L001_R2_001.filtered.trimmed.paired.fastq.gzENCORE232517
    NT-BGKcLV46-2B_S48_L001_R1_001.filtered.trimmed.paired.fastq.gzENCODE_DATA/set77/fastq_trimmedfastqreadsknockdown followed by RNA-seqGraveley Lab3412NovaSeq6000100paired-ended1ENCORE232168
    NT-BGKcLV46-2_S2_L001_R1_001.filtered.trimmed.paired.fastq.gzENCODE_DATA/set77/fastq_trimmedfastqreadsknockdown followed by RNA-seqGraveley Lab3366NovaSeq6000100paired-ended1ENCORE232169
    NT-BGKcLV46-2B_S48_L001_R2_001.filtered.trimmed.paired.fastq.gzENCODE_DATA/set77/fastq_trimmedfastqreadsknockdown followed by RNA-seqGraveley Lab3412NovaSeq6000100paired-ended2ENCORE232218
    NT-BGKcLV46-2_S2_L001_R2_001.filtered.trimmed.paired.fastq.gzENCODE_DATA/set77/fastq_trimmedfastqreadsknockdown followed by RNA-seqGraveley Lab3366NovaSeq6000100paired-ended2ENCORE232219
    NT-BGKcLV46-2B_Aligned.sortedByCoord.out.bamENCODE_DATA/set77/STAR_ENCORE2_trimmed_file_linksbamalignmentsknockdown followed by RNA-seqGraveley Lab3412GRCh38V40NT-BGKcLV46-2B_S48_L001_R1_001.filtered.trimmed.paired.fastq.gz,NT-BGKcLV46-2B_S48_L001_R2_001.filtered.trimmed.paired.fastq.gzENCORE232268
    NT-BGKcLV46-2_Aligned.sortedByCoord.out.bamENCODE_DATA/set77/STAR_ENCORE2_trimmed_file_linksbamalignmentsknockdown followed by RNA-seqGraveley Lab3366GRCh38V40NT-BGKcLV46-2_S2_L001_R1_001.filtered.trimmed.paired.fastq.gz,NT-BGKcLV46-2_S2_L001_R2_001.filtered.trimmed.paired.fastq.gzENCORE232269
    NT-BGKcLV46-2B_Signal.UniqueMultiple.strand-.bwENCODE_DATA/set77/STAR_ENCORE2_trimmed_file_linksbigWig-allminus strand signal of all readsknockdown followed by RNA-seqGraveley Lab3412GRCh38V40NT-BGKcLV46-2B_Aligned.sortedByCoord.out.bamENCORE232318
    NT-BGKcLV46-2_Signal.UniqueMultiple.strand-.bwENCODE_DATA/set77/STAR_ENCORE2_trimmed_file_linksbigWig-allminus strand signal of all readsknockdown followed by RNA-seqGraveley Lab3366GRCh38V40NT-BGKcLV46-2_Aligned.sortedByCoord.out.bamENCORE232319
    NT-BGKcLV46-2B_Signal.UniqueMultiple.strand+.bwENCODE_DATA/set77/STAR_ENCORE2_trimmed_file_linksbigWig+allplus strand signal of all readsknockdown followed by RNA-seqGraveley Lab3412GRCh38V40NT-BGKcLV46-2B_Aligned.sortedByCoord.out.bamENCORE232368
    NT-BGKcLV46-2_Signal.UniqueMultiple.strand+.bwENCODE_DATA/set77/STAR_ENCORE2_trimmed_file_linksbigWig+allplus strand signal of all readsknockdown followed by RNA-seqGraveley Lab3366GRCh38V40NT-BGKcLV46-2_Aligned.sortedByCoord.out.bamENCORE232369
    NT-BGKcLV46-2B_Signal.Unique.strand-.bwENCODE_DATA/set77/STAR_ENCORE2_trimmed_file_linksbigWig-uniqueminus strand signal of unique readsknockdown followed by RNA-seqGraveley Lab3412GRCh38V40NT-BGKcLV46-2B_Aligned.sortedByCoord.out.bamENCORE232418
    NT-BGKcLV46-2_Signal.Unique.strand-.bwENCODE_DATA/set77/STAR_ENCORE2_trimmed_file_linksbigWig-uniqueminus strand signal of unique readsknockdown followed by RNA-seqGraveley Lab3366GRCh38V40NT-BGKcLV46-2_Aligned.sortedByCoord.out.bamENCORE232419
    NT-BGKcLV46-2B_Signal.Unique.strand+.bwENCODE_DATA/set77/STAR_ENCORE2_trimmed_file_linksbigWig+uniqueplus strand signal of unique readsknockdown followed by RNA-seqGraveley Lab3412GRCh38V40NT-BGKcLV46-2B_Aligned.sortedByCoord.out.bamENCORE232468
    NT-BGKcLV46-2_Signal.Unique.strand+.bwENCODE_DATA/set77/STAR_ENCORE2_trimmed_file_linksbigWig+uniqueplus strand signal of unique readsknockdown followed by RNA-seqGraveley Lab3366GRCh38V40NT-BGKcLV46-2_Aligned.sortedByCoord.out.bamENCORE232469
    NT-BGKcLV46-2B_quant.sfENCODE_DATA/set77/salmon_ENCORE2_file_linkstranscript_quantificationtranscript quantificationsknockdown followed by RNA-seqGraveley Lab3412GRCh38V40NT-BGKcLV46-2B_S48_L001_R1_001.filtered.trimmed.paired.fastq.gz,NT-BGKcLV46-2B_S48_L001_R2_001.filtered.trimmed.paired.fastq.gzENCORE232518
    NT-BGKcLV46-2_quant.sfENCODE_DATA/set77/salmon_ENCORE2_file_linkstranscript_quantificationtranscript quantificationsknockdown followed by RNA-seqGraveley Lab3366GRCh38V40NT-BGKcLV46-2_S2_L001_R1_001.filtered.trimmed.paired.fastq.gz,NT-BGKcLV46-2_S2_L001_R2_001.filtered.trimmed.paired.fastq.gzENCORE232519