DDX59-BGKcLV08-23_TCTCTACT+CGCGGTTC_HGLMVDMXX_L001_R1_001.filtered.trimmed.paired.fastq.gz | ENCODE_DATA/set41/fastq_trimmed | fastq | reads | knockdown followed by RNA-seq | Graveley Lab | 267 | | | | | | | | NT-BGKcLV08-1_CCGCGGTT+AGCGCTAG_HGLMVDMXX_L001_R1_001.filtered.trimmed.paired.fastq.gz,NT-BGKcLV08-2_TTATAACC+GATATCGA_HGLMVDMXX_L001_R1_001.filtered.trimmed.paired.fastq.gz | ENCODE4 | | 513 |
DDX59-BGKcLV08-23_TCTCTACT+CGCGGTTC_HGLMVDMXX_L001_R2_001.filtered.trimmed.paired.fastq.gz | ENCODE_DATA/set41/fastq_trimmed | fastq | reads | knockdown followed by RNA-seq | Graveley Lab | 267 | | | | | | | | NT-BGKcLV08-1_CCGCGGTT+AGCGCTAG_HGLMVDMXX_L001_R2_001.filtered.trimmed.paired.fastq.gz,NT-BGKcLV08-2_TTATAACC+GATATCGA_HGLMVDMXX_L001_R2_001.filtered.trimmed.paired.fastq.gz | ENCODE4 | | 583 |
DDX59-BGKcLV08-23_Aligned.sortedByCoord.out.bam | ENCODE_DATA/set41/STAR_ENCORE2_trimmed_file_links | bam | alignments | knockdown followed by RNA-seq | Graveley Lab | 267 | | | | | GRCh38 | V40 | DDX59-BGKcLV08-23_TCTCTACT+CGCGGTTC_HGLMVDMXX_L001_R1_001.filtered.trimmed.paired.fastq.gz,DDX59-BGKcLV08-23_TCTCTACT+CGCGGTTC_HGLMVDMXX_L001_R2_001.filtered.trimmed.paired.fastq.gz | | ENCORE2 | | 26751 |
DDX59-BGKcLV08-23_Signal.Unique.strand+.bw | ENCODE_DATA/set41/STAR_ENCORE2_trimmed_file_links | bigWig+unique | plus strand signal of unique reads | knockdown followed by RNA-seq | Graveley Lab | 267 | | | | | GRCh38 | V40 | DDX59-BGKcLV08-23/Aligned.sortedByCoord.out.bam | | ENCORE2 | | 26821 |
DDX59-BGKcLV08-23_Signal.Unique.strand-.bw | ENCODE_DATA/set41/STAR_ENCORE2_trimmed_file_links | bigWig-unique | minus strand signal of unique reads | knockdown followed by RNA-seq | Graveley Lab | 267 | | | | | GRCh38 | V40 | DDX59-BGKcLV08-23/Aligned.sortedByCoord.out.bam | | ENCORE2 | | 26891 |
DDX59-BGKcLV08-23_Signal.UniqueMultiple.strand+.bw | ENCODE_DATA/set41/STAR_ENCORE2_trimmed_file_links | bigWig+all | plus strand signal of all reads | knockdown followed by RNA-seq | Graveley Lab | 267 | | | | | GRCh38 | V40 | DDX59-BGKcLV08-23/Aligned.sortedByCoord.out.bam | | ENCORE2 | | 26961 |
DDX59-BGKcLV08-23_Signal.UniqueMultiple.strand-.bw | ENCODE_DATA/set41/STAR_ENCORE2_trimmed_file_links | bigWig-all | minus strand signal of all reads | knockdown followed by RNA-seq | Graveley Lab | 267 | | | | | GRCh38 | V40 | DDX59-BGKcLV08-23/Aligned.sortedByCoord.out.bam | | ENCORE2 | | 27031 |
DDX59-BGKcLV08-23_quant.sf | ENCODE_DATA/set41/salmon_ENCORE2 | transcript_quantification | transcript quantifications | knockdown followed by RNA-seq | Graveley Lab | 267 | | | | | GRCh38 | V40 | DDX59-BGKcLV08-23_TCTCTACT+CGCGGTTC_HGLMVDMXX_L001_R1_001.filtered.trimmed.paired.fastq.gz,DDX59-BGKcLV08-23_TCTCTACT+CGCGGTTC_HGLMVDMXX_L001_R2_001.filtered.trimmed.paired.fastq.gz | | ENCORE2 | | 27101 |
DDX59-BGKcLV08-24_CTCTCGTC+TATAACCT_HGLMVDMXX_L001_R1_001.filtered.trimmed.paired.fastq.gz | ENCODE_DATA/set41/fastq_trimmed | fastq | reads | knockdown followed by RNA-seq | Graveley Lab | 268 | | | | | | | | NT-BGKcLV08-1_CCGCGGTT+AGCGCTAG_HGLMVDMXX_L001_R1_001.filtered.trimmed.paired.fastq.gz,NT-BGKcLV08-2_TTATAACC+GATATCGA_HGLMVDMXX_L001_R1_001.filtered.trimmed.paired.fastq.gz | ENCODE4 | | 514 |
DDX59-BGKcLV08-24_CTCTCGTC+TATAACCT_HGLMVDMXX_L001_R2_001.filtered.trimmed.paired.fastq.gz | ENCODE_DATA/set41/fastq_trimmed | fastq | reads | knockdown followed by RNA-seq | Graveley Lab | 268 | | | | | | | | NT-BGKcLV08-1_CCGCGGTT+AGCGCTAG_HGLMVDMXX_L001_R2_001.filtered.trimmed.paired.fastq.gz,NT-BGKcLV08-2_TTATAACC+GATATCGA_HGLMVDMXX_L001_R2_001.filtered.trimmed.paired.fastq.gz | ENCODE4 | | 584 |
DDX59-BGKcLV08-24_Aligned.sortedByCoord.out.bam | ENCODE_DATA/set41/STAR_ENCORE2_trimmed_file_links | bam | alignments | knockdown followed by RNA-seq | Graveley Lab | 268 | | | | | GRCh38 | V40 | DDX59-BGKcLV08-24_CTCTCGTC+TATAACCT_HGLMVDMXX_L001_R1_001.filtered.trimmed.paired.fastq.gz,DDX59-BGKcLV08-24_CTCTCGTC+TATAACCT_HGLMVDMXX_L001_R2_001.filtered.trimmed.paired.fastq.gz | | ENCORE2 | | 26752 |
DDX59-BGKcLV08-24_Signal.Unique.strand+.bw | ENCODE_DATA/set41/STAR_ENCORE2_trimmed_file_links | bigWig+unique | plus strand signal of unique reads | knockdown followed by RNA-seq | Graveley Lab | 268 | | | | | GRCh38 | V40 | DDX59-BGKcLV08-24/Aligned.sortedByCoord.out.bam | | ENCORE2 | | 26822 |
DDX59-BGKcLV08-24_Signal.Unique.strand-.bw | ENCODE_DATA/set41/STAR_ENCORE2_trimmed_file_links | bigWig-unique | minus strand signal of unique reads | knockdown followed by RNA-seq | Graveley Lab | 268 | | | | | GRCh38 | V40 | DDX59-BGKcLV08-24/Aligned.sortedByCoord.out.bam | | ENCORE2 | | 26892 |
DDX59-BGKcLV08-24_Signal.UniqueMultiple.strand+.bw | ENCODE_DATA/set41/STAR_ENCORE2_trimmed_file_links | bigWig+all | plus strand signal of all reads | knockdown followed by RNA-seq | Graveley Lab | 268 | | | | | GRCh38 | V40 | DDX59-BGKcLV08-24/Aligned.sortedByCoord.out.bam | | ENCORE2 | | 26962 |
DDX59-BGKcLV08-24_Signal.UniqueMultiple.strand-.bw | ENCODE_DATA/set41/STAR_ENCORE2_trimmed_file_links | bigWig-all | minus strand signal of all reads | knockdown followed by RNA-seq | Graveley Lab | 268 | | | | | GRCh38 | V40 | DDX59-BGKcLV08-24/Aligned.sortedByCoord.out.bam | | ENCORE2 | | 27032 |
DDX59-BGKcLV08-24_quant.sf | ENCODE_DATA/set41/salmon_ENCORE2 | transcript_quantification | transcript quantifications | knockdown followed by RNA-seq | Graveley Lab | 268 | | | | | GRCh38 | V40 | DDX59-BGKcLV08-24_CTCTCGTC+TATAACCT_HGLMVDMXX_L001_R1_001.filtered.trimmed.paired.fastq.gz,DDX59-BGKcLV08-24_CTCTCGTC+TATAACCT_HGLMVDMXX_L001_R2_001.filtered.trimmed.paired.fastq.gz | | ENCORE2 | | 27102 |