TBRG4-LV08-60_Aligned.sortedByCoord.out.bam | ENCODE_DATA/set10/STAR_ENCORE2_file_links | bam | alignments | knockdown followed by RNA-seq | Graveley Lab | 639 | | | | | GRCh38 | V40 | TBRG4-LV08-60_TGACCA_L008_R1_001.fastq.gz,TBRG4-LV08-60_TGACCA_L008_R2_001.fastq.gz | | ENCORE2 | | 12026 |
TBRG4-LV08-60_TGACCA_L008_R1_001.fastq.gz | ENCODE_DATA/set10/fastq | fastq | reads | knockdown followed by RNA-seq | Graveley Lab | 639 | HiSeq2000 | 100 | paired-ended | 1 | | | | Nontarget-LV08-1_00003531_GATCAG_L005_R1_001.fastq.gz,nontarget-LV08-2_00003531_TAGCTT_L005_R1_001.fastq.gz | ENCODE3 | | 12082 |
TBRG4-LV08-60_TGACCA_L008_R2_001.fastq.gz | ENCODE_DATA/set10/fastq | fastq | reads | knockdown followed by RNA-seq | Graveley Lab | 639 | HiSeq2000 | 100 | paired-ended | 2 | | | | Nontarget-LV08-1_00003531_GATCAG_L005_R2_001.fastq.gz,nontarget-LV08-2_00003531_TAGCTT_L005_R2_001.fastq.gz | ENCODE3 | | 12138 |
TBRG4-LV08-60_Signal.Unique.strand+.bw | ENCODE_DATA/set10/STAR_ENCORE2_file_links | bigWig+unique | plus strand signal of unique reads | knockdown followed by RNA-seq | Graveley Lab | 639 | | | | | GRCh38 | V40 | TBRG4-LV08-60/Aligned.sortedByCoord.out.bam | | ENCORE2 | | 12194 |
TBRG4-LV08-60_Signal.Unique.strand-.bw | ENCODE_DATA/set10/STAR_ENCORE2_file_links | bigWig-unique | minus strand signal of unique reads | knockdown followed by RNA-seq | Graveley Lab | 639 | | | | | GRCh38 | V40 | TBRG4-LV08-60/Aligned.sortedByCoord.out.bam | | ENCORE2 | | 12250 |
TBRG4-LV08-60_Signal.UniqueMultiple.strand+.bw | ENCODE_DATA/set10/STAR_ENCORE2_file_links | bigWig+all | plus strand signal of all reads | knockdown followed by RNA-seq | Graveley Lab | 639 | | | | | GRCh38 | V40 | TBRG4-LV08-60/Aligned.sortedByCoord.out.bam | | ENCORE2 | | 12306 |
TBRG4-LV08-60_Signal.UniqueMultiple.strand-.bw | ENCODE_DATA/set10/STAR_ENCORE2_file_links | bigWig-all | minus strand signal of all reads | knockdown followed by RNA-seq | Graveley Lab | 639 | | | | | GRCh38 | V40 | TBRG4-LV08-60/Aligned.sortedByCoord.out.bam | | ENCORE2 | | 12362 |
TBRG4-LV08-60_quant.sf | ENCODE_DATA/set10/salmon_ENCORE2 | transcript_quantification | transcript quantifications | knockdown followed by RNA-seq | Graveley Lab | 639 | | | | | GRCh38 | V40 | TBRG4-LV08-60_TGACCA_L008_R1_001.fastq.gz,TBRG4-LV08-60_TGACCA_L008_R2_001.fastq.gz | | ENCORE2 | | 13361 |