non-target      CRISPR in HepG2      Control: NT-BGHcLV05-D

General Information

List KD experiments controlled by BGHcLV05-1 and BGHcLV05-2


NT-BGHcLV05-1E,NT-BGHcLV05-2E:
  • GNL3-BGHcLV05-HepG2

    • NT-BGHcLV05-1C,NT-BGHcLV05-2C:
  • DDX42-BGHcLV05-HepG2
  • FXR2-BGHcLV05-HepG2

    • NT-BGHcLV05-1,NT-BGHcLV05-2 (alias:NT_BGHcLV05-1,NT_BGHcLV05-2):
  • CDC40-BGHcLV05-HepG2
  • DROSHA-BGHcLV05-HepG2
  • RBM5-BGHcLV05-HepG2

    • NT-BGHcLV05-1B,NT-BGHcLV05-2B (alias:NT-BGHcLV05-1B,NT-BGHcLV05-2B):
  • AGGF1-BGHcLV05-HepG2_A
  • EIF3H-BGHcLV05-HepG2_A
  • SRSF4-BGHcLV05-HepG2_A

    • NT-BGHcLV05-1D,NT-BGHcLV05-2D:
  • AGGF1-BGHcLV05-HepG2
  • EIF3H-BGHcLV05-HepG2
  • SRSF4-BGHcLV05-HepG2




    • Experiment Information (Status: Released)
    BGHcLV05-1BGHcLV05-2
    idx3738
    TRCN#_or_BGC#BGC#0000000BGC#0000000
    shRNA_or_gRNA_sequenceCAGTCGGGCGTCATCATGATCAGTCGGGCGTCATCATGAT
    PAM
    Namenon -targetnon -target
    Sample_IDBGHcLV05-1BGHcLV05-2
    transduction_Date7/12/167/12/16
    daysDAY 6DAY 6
    RBP_namenon-targetnon-target
    qPCR_result
    Ave_qPCR
    RT-qPCR_primer-F
    RT-qPCR_primer-R
    protein_conc03770
    WB_result
    Ave_WB
    WB_DONE_date
    MW
    IP
    antibody_Cat#
    Antibody DCC ID
    submitted_to_DCC_date
    Rep1_TPM00
    Rep2_TPM00
    ActionReadyReady
    Library_start_date08/15/1608/15/16
    repeat_library5/11/175/11/17
    Note
    ID61786179




    Western Blot
    Western Blot info was not avaliable




    Experiment Status
    BGHcLV05-1BGHcLV05-1BGHcLV05-1BGHcLV05-1BGHcLV05-1BGHcLV05-2BGHcLV05-2BGHcLV05-2BGHcLV05-2BGHcLV05-2
    Sample_IDBGHcLV05-1BGHcLV05-1BGHcLV05-1BGHcLV05-1BGHcLV05-1BGHcLV05-2BGHcLV05-2BGHcLV05-2BGHcLV05-2BGHcLV05-2
    Sample NameNT-BGHcLV05-1CNT_BGHcLV05-1NT-BGHcLV05-1BNT-BGHcLV05-1ENT-BGHcLV05-2CNT_BGHcLV05-2NT-BGHcLV05-2B
    Sample NameNT-BGHcLV05-1CNT_BGHcLV05-1NT-BGHcLV05-1BNT-BGHcLV05-1ENT-BGHcLV05-1DNT-BGHcLV05-2CNT_BGHcLV05-2NT-BGHcLV05-2BNT-BGHcLV05-2ENT-BGHcLV05-2D
    RBPnon-targetnon-targetnon-targetnon-targetnon-targetnon-targetnon-targetnon-targetnon-targetnon-target
    Cell_LineHepG2HepG2HepG2HepG2HepG2HepG2HepG2HepG2HepG2HepG2
    Exp UID
    StatusReleasedReleasedReleasedReleasedReleasedReleasedReleasedReleasedReleasedReleased
    Status_date2020-12-012016-12-122017-11-202020-12-012022-03-072020-12-012016-12-122017-11-202020-12-012022-03-07
    ProjectENCODE4ENCODE3ENCODE3ENCODE4ENCODE4ENCODE4ENCODE3ENCODE3ENCODE4ENCODE4
    Note
    ID1001327135556801045710113281356568110458




    Library-Prep Information
    BGHcLV05-1BGHcLV05-1BGHcLV05-1BGHcLV05-1BGHcLV05-1BGHcLV05-2BGHcLV05-2BGHcLV05-2BGHcLV05-2BGHcLV05-2
    Sample #4117742278
    Sample NameNT-BGHcLV05-1ENT-BGHcLV05-1CNT-BGHcLV05-1NT-BGHcLV05-1BNT-BGHcLV05-1DNT-BGHcLV05-2ENT-BGHcLV05-2CNT-BGHcLV05-2NT-BGHcLV05-2BNT-BGHcLV05-2D
    Sample_Name_AliasNT_BGHcLV05-1NT-BGHcLV05-1BNT_BGHcLV05-2NT-BGHcLV05-2B
    Index Well PositionG03S22S09S22S22H03S23S10S23S23
    Index_tableIDT_UniqueDualIndex_96IDT_TruSeqSingleIndex_24IDT_TruSeqSingleIndex_24IDT_TruSeqSingleIndex_24IDT_TruSeqSingleIndex_24IDT_UniqueDualIndex_96IDT_TruSeqSingleIndex_24IDT_TruSeqSingleIndex_24IDT_TruSeqSingleIndex_24IDT_TruSeqSingleIndex_24
    LibPrep_date2020-01-022018-01-022016-08-152017-05-112018-11-192020-01-022018-01-022016-08-152017-05-112018-11-19
    Lib_IDLib-200102Lib-180102Lib-160815Lib-170511Lib-181119Lib-200102Lib-180102Lib-160815Lib-170511Lib-181119
    Tecan_Location1-C11-D1
    Tecan23.3821.79
    Tecan_date2019-12-162019-12-16
    Size_bp278323297280324297
    Peak_Molarity20.2022.1058.2016.9018.6044.90
    libSampleQC_DNA_WellDNA_Library_set43-44/set1/G11.pngDNA_Library_set40/set1/E7.pngDNA_Library_LV37-38/set1/A1.pngDNA_Library_set39/set2/E7.pngDNA_Library_set41/set1/E9.pngDNA_Library_set43-44/set1/H11.pngDNA_Library_set40/set1/F7.pngDNA_Library_LV37-38/set1/B1.pngDNA_Library_set39/set2/F7.pngDNA_Library_set41/set1/F9.png
    RIN9.09.09.09.09.09.09.09.09.09.0
    libSample_RNA_WellRNA_Library_cLV04-05/set1/A7.pngRNA_Library_cLV04-05/set1/A7.pngRNA_Library_cLV04-05/set1/A7.pngRNA_Library_cLV04-05/set1/A7.pngRNA_Library_cLV04-05/set1/A7.pngRNA_Library_cLV04-05/set1/B7.pngRNA_Library_cLV04-05/set1/B7.pngRNA_Library_cLV04-05/set1/B7.pngRNA_Library_cLV04-05/set1/B7.pngRNA_Library_cLV04-05/set1/B7.png
    SampleQC_methodTapeStationTapeStationTapeStationTapeStationTapeStationTapeStation
    SampleQC_date2019-12-112018-01-022022-03-012019-12-112018-01-022022-03-01
    Sample_IDBGHcLV05-1BGHcLV05-1BGHcLV05-1BGHcLV05-1BGHcLV05-1BGHcLV05-2BGHcLV05-2BGHcLV05-2BGHcLV05-2BGHcLV05-2
    RBPNTNTNTNTNTNTNTNTNTNT
    Batch_IDBGHcLV05BGHcLV05BGHcLV05BGHcLV05BGHcLV05BGHcLV05BGHcLV05BGHcLV05BGHcLV05BGHcLV05
    WB_result0.0000.0000.0000.0000.0000.0000.0000.0000.0000.000
    Library DescriptionTruSeq mRNATruSeq mRNATruSeq mRNATruSeq mRNATruSeq mRNATruSeq mRNATruSeq mRNATruSeq mRNATruSeq mRNATruSeq mRNA
    Repeat_Library_SuffixECBDECBD
    Lib_StatusSendToSequenceSendToSequenceSendToSequenceSendToSequenceSendToSequenceSendToSequenceSendToSequenceSendToSequenceSendToSequenceSendToSequence
    ProjectENCODE4ENCODE4ENCODE3ENCODE3ENCODE4ENCODE4ENCODE4ENCODE3ENCODE3ENCODE4
    ID617924302030503254618925302130513255




    Sequencing Information
    BGHcLV05-1BGHcLV05-1BGHcLV05-1BGHcLV05-1BGHcLV05-1BGHcLV05-2BGHcLV05-2BGHcLV05-2BGHcLV05-2BGHcLV05-2
    Sample_IDBGHcLV05-1BGHcLV05-1BGHcLV05-1BGHcLV05-1BGHcLV05-1BGHcLV05-2BGHcLV05-2BGHcLV05-2BGHcLV05-2BGHcLV05-2
    Sample NameNT-BGHcLV05-1ENT-BGHcLV05-1CNT_BGHcLV05-1NT-BGHcLV05-1BNT-BGHcLV05-1DNT-BGHcLV05-2ENT-BGHcLV05-2CNT_BGHcLV05-2NT-BGHcLV05-2BNT-BGHcLV05-2D
    Pool IDPool-200103Pool-180109Pool-161129Pool-170911Pool-181119Pool-200103Pool-180109Pool-161129Pool-170911Pool-181119
    LocalServer_folderset44_Hset40_HBGHcLV05set39_Hset41_spikeinsset44_Hset40_HBGHcLV05set39_Hset41_spikeins
    total_reads113,097,36829,293,20067,410,174133,000,00025,076,430236,648,13832,030,52268,504,68836,128,278174,727,318
    total_aligned_reads108,453,06825,397,61051,351,608116,744,48824,574,508204,943,25627,564,67855,811,79231,522,038144,788,540
    unique_aligned_reads102,002,18623,984,05448,453,550109,858,40423,173,394192,709,78426,029,65252,433,09429,673,470135,864,374
    percent_uniqueAligned0.901900.818760.718790.826000.924110.814330.812650.765390.821340.77758
    correlation_replicates0.9960160.9994720.9843370.9965570.9941190.9960160.9994720.9843370.9965570.994119
    spikein_reads17,6965,70864,3883230,06062,6524,22094,86238168,278
    percent_spikeins0.000160.000190.000960.001200.000260.000130.001380.00096
    original_ReadLength150100100100100150100100100100
    QC_StatusSubmittedSubmittedSubmittedSubmittedSubmittedSubmittedSubmittedSubmittedSubmittedSubmitted
    ID169327167317011967170328167417021968




    Data Submission Information
    BGHcLV05-1BGHcLV05-1BGHcLV05-1BGHcLV05-1BGHcLV05-1BGHcLV05-1BGHcLV05-1BGHcLV05-1BGHcLV05-1BGHcLV05-1BGHcLV05-1BGHcLV05-1BGHcLV05-1BGHcLV05-2BGHcLV05-2BGHcLV05-2BGHcLV05-2BGHcLV05-2BGHcLV05-2BGHcLV05-2BGHcLV05-2
    ENCODE_aliasbrenton-graveley:NT-BGHcLV05-Ebrenton-graveley:L-NT-BGHcLV05-1Ebrenton-graveley:NT-BGHcLV05-1E_S33_R1_001.filtered.trimmed.paired.fastq.gzbrenton-graveley:NT-BGHcLV05-1E_S33_R2_001.filtered.trimmed.paired.fastq.gzbrenton-graveley:NT-BGHcLV05-Cbrenton-graveley:NT_BGHcLV05-1brenton-graveley:L-NT-BGHcLV05-1Cbrenton-graveley:NT-BGHcLV05-1C_CGTACG_ACBYWVANXX_L003_001.R1.fastq.gzbrenton-graveley:NT-BGHcLV05-1C_CGTACG_ACBYWVANXX_L003_001.R2.fastq.gzbrenton-graveley:NT_BGHcLV05brenton-graveley:NT-BGHcLV05-Bbrenton-graveley:NT-BGHcLV05-Dbrenton-graveley:L-NT-BGHcLV05-1Dbrenton-graveley:L-NT-BGHcLV05-2Ebrenton-graveley:NT-BGHcLV05-2E_S34_R1_001.filtered.trimmed.paired.fastq.gzbrenton-graveley:NT-BGHcLV05-2E_S34_R2_001.filtered.trimmed.paired.fastq.gzbrenton-graveley:NT_BGHcLV05-2brenton-graveley:L-NT-BGHcLV05-2Cbrenton-graveley:NT-BGHcLV05-2C_GAGTGG_ACBYWVANXX_L003_001.R1.fastq.gzbrenton-graveley:NT-BGHcLV05-2C_GAGTGG_ACBYWVANXX_L003_001.R2.fastq.gzbrenton-graveley:L-NT-BGHcLV05-2D
    ENCODE_accessionENCSR713OTFENCLB503RRJENCFF496AYEENCFF507NTFENCSR834IFUENCBS146XWOENCLB592MWKENCFF921QKGENCFF918GPMENCSR481WJHENCSR853AOVENCSR805TIZENCLB817XVMENCLB696VRJENCFF490RJJENCFF159BYZENCBS417JASENCLB204AKAENCFF803ODEENCFF545CCTENCLB559KQO
    object_typeexperimentlibraryfile_fastq1file_fastq2experimentbiosamplelibraryfile_fastq1file_fastq2experimentexperimentexperimentlibrarylibraryfile_fastq1file_fastq2biosamplelibraryfile_fastq1file_fastq2library
    assay_typeknockdown followed by RNA-seqknockdown followed by RNA-seqknockdown followed by RNA-seqknockdown followed by RNA-seqknockdown followed by RNA-seqknockdown followed by RNA-seqknockdown followed by RNA-seqknockdown followed by RNA-seqknockdown followed by RNA-seqknockdown followed by RNA-seqknockdown followed by RNA-seqknockdown followed by RNA-seqknockdown followed by RNA-seqknockdown followed by RNA-seqknockdown followed by RNA-seqknockdown followed by RNA-seqknockdown followed by RNA-seqknockdown followed by RNA-seqknockdown followed by RNA-seqknockdown followed by RNA-seqknockdown followed by RNA-seq
    Sample_IDBGHcLV05-1BGHcLV05-1BGHcLV05-1BGHcLV05-1BGHcLV05-1BGHcLV05-1BGHcLV05-1BGHcLV05-1BGHcLV05-1BGHcLV05-1BGHcLV05-1BGHcLV05-1BGHcLV05-1BGHcLV05-2BGHcLV05-2BGHcLV05-2BGHcLV05-2BGHcLV05-2BGHcLV05-2BGHcLV05-2BGHcLV05-2
    Sample NameNT-BGHcLV05-1ENT-BGHcLV05-1ENT-BGHcLV05-1ENT-BGHcLV05-1ENT-BGHcLV05-1CNT_BGHcLV05-1NT-BGHcLV05-1CNT-BGHcLV05-1CNT-BGHcLV05-1CNT_BGHcLV05-1NT-BGHcLV05-1BNT-BGHcLV05-1DNT-BGHcLV05-1DNT-BGHcLV05-2ENT-BGHcLV05-2ENT-BGHcLV05-2ENT_BGHcLV05-2NT-BGHcLV05-2CNT-BGHcLV05-2CNT-BGHcLV05-2CNT-BGHcLV05-2D
    SelectedYesYesYesYesYesYesYesYesYesYesYesYesYesYesYesYesYesYesYesYesYes
    StatusReleasedReleasedReleasedReleasedReleasedReleasedReleasedReleasedReleasedReleasedReleasedReleasedReleasedReleasedReleasedReleasedReleasedReleasedReleasedReleasedReleased
    Status_Date2022-03-072022-03-072022-03-072022-03-072022-03-072019-03-132022-03-072022-03-072022-03-072022-03-072022-03-072022-03-072022-03-072022-03-072022-03-072022-03-072019-03-132022-03-072022-03-072022-03-072022-03-07
    ProjectENCODE4ENCODE4ENCODE4ENCODE4ENCODE4ENCODE4ENCODE4ENCODE4ENCODE4ENCODE3ENCODE3ENCODE4ENCODE4ENCODE4ENCODE4ENCODE4ENCODE4ENCODE4ENCODE4ENCODE4ENCODE4
    LV44H_library_protocolcLV04-05_biosample_protocolLV40_library_protocolLV41_library_protocol_spikeinsLV44H_library_protocolcLV04-05_biosample_protocolLV40_library_protocolLV41_library_protocol_spikeins
    protocol_URLL-NT-BGHcLV05-1E.pdfNT_BGHcLV05-1.pdfL-NT-BGHcLV05-1C.pdfL-NT-BGHcLV05-1D.pdfL-NT-BGHcLV05-2E.pdfNT_BGHcLV05-2.pdfL-NT-BGHcLV05-2C.pdfL-NT-BGHcLV05-2D.pdf
    ID4333458263414421482153815891626320332177382740133558363514831539159016277412




    File Information
    file_namefile_pathfile_formatoutput_typeassay_typelabSample IDplatformread_lengthrun_typepaired_endassemblygenome_annotationderived_fromcontrolled_byProjectNoteFILE_ID
    NT-BGHcLV05-1E_S33_R1_001.filtered.trimmed.paired.fastq.gzENCODE_DATA/set44_H/fastq_trimmedfastqreadsknockdown followed by RNA-seqGraveley Lab169NovaSeq6000100paired-ended1ENCODE4197
    NT-BGHcLV05-1E_S33_R2_001.filtered.trimmed.paired.fastq.gzENCODE_DATA/set44_H/fastq_trimmedfastqreadsknockdown followed by RNA-seqGraveley Lab169NovaSeq6000100paired-ended2ENCODE4249
    NT-BGHcLV05-1C_CGTACG_ACBYWVANXX_L003_001.R1.fastq.gzENCODE_DATA/set40_H/fastqfastqreadsknockdown followed by RNA-seqGraveley Lab327HiSeq2500100paired-ended1ENCODE4659
    NT-BGHcLV05-1C_CGTACG_ACBYWVANXX_L003_001.R2.fastq.gzENCODE_DATA/set40_H/fastqfastqreadsknockdown followed by RNA-seqGraveley Lab327HiSeq2500100paired-ended2ENCODE4701
    NT-BGHcLV05-1B_CGTACG_ACBE67ANXX_L003_001.R1.fastq.gzENCODE_DATA/set39_H/fastqfastqreadsknockdown followed by RNA-seqGraveley Lab1701HiSeq2500100paired-ended1ENCODE322278
    NT-BGHcLV05-1B_CGTACG_ACBE67ANXX_L003_001.R2.fastq.gzENCODE_DATA/set39_H/fastqfastqreadsknockdown followed by RNA-seqGraveley Lab1701HiSeq2500100paired-ended2ENCODE322302
    NT-BGHcLV05-1B_Aligned.sortedByCoord.out.bamENCODE_DATA/set39_H/STAR_ENCORE2_file_linksbamalignmentsknockdown followed by RNA-seqGraveley Lab1701GRCh38V40NT-BGHcLV05-1B_CGTACG_ACBE67ANXX_L003_001.R1.fastq.gz,NT-BGHcLV05-1B_CGTACG_ACBE67ANXX_L003_001.R2.fastq.gzENCORE222326
    NT-BGHcLV05-1B_Signal.Unique.strand+.bwENCODE_DATA/set39_H/STAR_ENCORE2_file_linksbigWig+uniqueplus strand signal of unique readsknockdown followed by RNA-seqGraveley Lab1701GRCh38V40NT-BGHcLV05-1B/Aligned.sortedByCoord.out.bamENCORE222350
    NT-BGHcLV05-1B_Signal.Unique.strand-.bwENCODE_DATA/set39_H/STAR_ENCORE2_file_linksbigWig-uniqueminus strand signal of unique readsknockdown followed by RNA-seqGraveley Lab1701GRCh38V40NT-BGHcLV05-1B/Aligned.sortedByCoord.out.bamENCORE222374
    NT-BGHcLV05-1B_Signal.UniqueMultiple.strand+.bwENCODE_DATA/set39_H/STAR_ENCORE2_file_linksbigWig+allplus strand signal of all readsknockdown followed by RNA-seqGraveley Lab1701GRCh38V40NT-BGHcLV05-1B/Aligned.sortedByCoord.out.bamENCORE222398
    NT-BGHcLV05-1B_Signal.UniqueMultiple.strand-.bwENCODE_DATA/set39_H/STAR_ENCORE2_file_linksbigWig-allminus strand signal of all readsknockdown followed by RNA-seqGraveley Lab1701GRCh38V40NT-BGHcLV05-1B/Aligned.sortedByCoord.out.bamENCORE222422
    NT-BGHcLV05-1B_quant.sfENCODE_DATA/set39_H/salmon_ENCORE2transcript_quantificationtranscript quantificationsknockdown followed by RNA-seqGraveley Lab1701GRCh38V40NT-BGHcLV05-1B_CGTACG_ACBE67ANXX_L003_001.R1.fastq.gz,NT-BGHcLV05-1B_CGTACG_ACBE67ANXX_L003_001.R2.fastq.gzENCORE222446
    NT_BGHcLV05-1_GATCAG_L002_001.R1.fastq.gzENCODE_DATA/BGHcLV05/fastqfastqreadsknockdown followed by RNA-seqGraveley Lab1673HiSeq2500100paired-ended1ENCODE323142
    NT_BGHcLV05-1_GATCAG_L002_001.R2.fastq.gzENCODE_DATA/BGHcLV05/fastqfastqreadsknockdown followed by RNA-seqGraveley Lab1673HiSeq2500100paired-ended2ENCODE323154
    NT_BGHcLV05-1_Aligned.sortedByCoord.out.bamENCODE_DATA/BGHcLV05/STAR_ENCORE2_file_linksbamalignmentsknockdown followed by RNA-seqGraveley Lab1673GRCh38V40NT_BGHcLV05-1_GATCAG_L002_001.R1.fastq.gz,NT_BGHcLV05-1_GATCAG_L002_001.R2.fastq.gzENCORE223166
    NT_BGHcLV05-1_Signal.Unique.strand+.bwENCODE_DATA/BGHcLV05/STAR_ENCORE2_file_linksbigWig+uniqueplus strand signal of unique readsknockdown followed by RNA-seqGraveley Lab1673GRCh38V40NT_BGHcLV05-1/Aligned.sortedByCoord.out.bamENCORE223178
    NT_BGHcLV05-1_Signal.Unique.strand-.bwENCODE_DATA/BGHcLV05/STAR_ENCORE2_file_linksbigWig-uniqueminus strand signal of unique readsknockdown followed by RNA-seqGraveley Lab1673GRCh38V40NT_BGHcLV05-1/Aligned.sortedByCoord.out.bamENCORE223190
    NT_BGHcLV05-1_Signal.UniqueMultiple.strand+.bwENCODE_DATA/BGHcLV05/STAR_ENCORE2_file_linksbigWig+allplus strand signal of all readsknockdown followed by RNA-seqGraveley Lab1673GRCh38V40NT_BGHcLV05-1/Aligned.sortedByCoord.out.bamENCORE223202
    NT_BGHcLV05-1_Signal.UniqueMultiple.strand-.bwENCODE_DATA/BGHcLV05/STAR_ENCORE2_file_linksbigWig-allminus strand signal of all readsknockdown followed by RNA-seqGraveley Lab1673GRCh38V40NT_BGHcLV05-1/Aligned.sortedByCoord.out.bamENCORE223214
    NT_BGHcLV05-1_quant.sfENCODE_DATA/BGHcLV05/salmon_ENCORE2transcript_quantificationtranscript quantificationsknockdown followed by RNA-seqGraveley Lab1673GRCh38V40NT_BGHcLV05-1_GATCAG_L002_001.R1.fastq.gz,NT_BGHcLV05-1_GATCAG_L002_001.R2.fastq.gzENCORE223226
    NT-BGHcLV05-1C_Aligned.sortedByCoord.out.bamENCODE_DATA/set40_H/STAR_ENCORE2_file_linksbamalignmentsknockdown followed by RNA-seqGraveley Lab327GRCh38V40NT-BGHcLV05-1C_CGTACG_ACBYWVANXX_L003_001.R1.fastq.gz,NT-BGHcLV05-1C_CGTACG_ACBYWVANXX_L003_001.R2.fastq.gzENCORE223262
    NT-BGHcLV05-1C_Signal.Unique.strand+.bwENCODE_DATA/set40_H/STAR_ENCORE2_file_linksbigWig+uniqueplus strand signal of unique readsknockdown followed by RNA-seqGraveley Lab327GRCh38V40NT-BGHcLV05-1C/Aligned.sortedByCoord.out.bamENCORE223296
    NT-BGHcLV05-1C_Signal.Unique.strand-.bwENCODE_DATA/set40_H/STAR_ENCORE2_file_linksbigWig-uniqueminus strand signal of unique readsknockdown followed by RNA-seqGraveley Lab327GRCh38V40NT-BGHcLV05-1C/Aligned.sortedByCoord.out.bamENCORE223330
    NT-BGHcLV05-1C_Signal.UniqueMultiple.strand+.bwENCODE_DATA/set40_H/STAR_ENCORE2_file_linksbigWig+allplus strand signal of all readsknockdown followed by RNA-seqGraveley Lab327GRCh38V40NT-BGHcLV05-1C/Aligned.sortedByCoord.out.bamENCORE223364
    NT-BGHcLV05-1C_Signal.UniqueMultiple.strand-.bwENCODE_DATA/set40_H/STAR_ENCORE2_file_linksbigWig-allminus strand signal of all readsknockdown followed by RNA-seqGraveley Lab327GRCh38V40NT-BGHcLV05-1C/Aligned.sortedByCoord.out.bamENCORE223398
    NT-BGHcLV05-1C_quant.sfENCODE_DATA/set40_H/salmon_ENCORE2transcript_quantificationtranscript quantificationsknockdown followed by RNA-seqGraveley Lab327GRCh38V40NT-BGHcLV05-1C_CGTACG_ACBYWVANXX_L003_001.R1.fastq.gz,NT-BGHcLV05-1C_CGTACG_ACBYWVANXX_L003_001.R2.fastq.gzENCORE223432
    NT-BGHcLV05-1E_Aligned.sortedByCoord.out.bamENCODE_DATA/set44_H/STAR_ENCORE2_trimmed_file_linksbamalignmentsknockdown followed by RNA-seqGraveley Lab169GRCh38V40NT-BGHcLV05-1E_S33_R1_001.filtered.trimmed.paired.fastq.gz,NT-BGHcLV05-1E_S33_R2_001.filtered.trimmed.paired.fastq.gzENCORE224917
    NT-BGHcLV05-1E_Signal.Unique.strand+.bwENCODE_DATA/set44_H/STAR_ENCORE2_trimmed_file_linksbigWig+uniqueplus strand signal of unique readsknockdown followed by RNA-seqGraveley Lab169GRCh38V40NT-BGHcLV05-1E/Aligned.sortedByCoord.out.bamENCORE224969
    NT-BGHcLV05-1E_Signal.Unique.strand-.bwENCODE_DATA/set44_H/STAR_ENCORE2_trimmed_file_linksbigWig-uniqueminus strand signal of unique readsknockdown followed by RNA-seqGraveley Lab169GRCh38V40NT-BGHcLV05-1E/Aligned.sortedByCoord.out.bamENCORE225021
    NT-BGHcLV05-1E_Signal.UniqueMultiple.strand+.bwENCODE_DATA/set44_H/STAR_ENCORE2_trimmed_file_linksbigWig+allplus strand signal of all readsknockdown followed by RNA-seqGraveley Lab169GRCh38V40NT-BGHcLV05-1E/Aligned.sortedByCoord.out.bamENCORE225073
    NT-BGHcLV05-1E_Signal.UniqueMultiple.strand-.bwENCODE_DATA/set44_H/STAR_ENCORE2_trimmed_file_linksbigWig-allminus strand signal of all readsknockdown followed by RNA-seqGraveley Lab169GRCh38V40NT-BGHcLV05-1E/Aligned.sortedByCoord.out.bamENCORE225125
    NT-BGHcLV05-1E_quant.sfENCODE_DATA/set44_H/salmon_ENCORE2transcript_quantificationtranscript quantificationsknockdown followed by RNA-seqGraveley Lab169GRCh38V40NT-BGHcLV05-1E_S33_R1_001.filtered.trimmed.paired.fastq.gz,NT-BGHcLV05-1E_S33_R2_001.filtered.trimmed.paired.fastq.gzENCORE225177
    NT-BGHcLV05-1D_CGTACG_HJMKJBCX2_L001_R1_001.filtered.trimmed.paired.fastq.gzENCODE_DATA/set41_spikeins/fastq_trimmedfastqreadsknockdown followed by RNA-seqGraveley Lab1967HiSeq2500100paired-ended1ENCORE227411
    NT-BGHcLV05-1D_CGTACG_HJMKJBCX2_L001_R2_001.filtered.trimmed.paired.fastq.gzENCODE_DATA/set41_spikeins/fastq_trimmedfastqreadsknockdown followed by RNA-seqGraveley Lab1967HiSeq2500100paired-ended2ENCORE227439
    NT-BGHcLV05-1D_Aligned.sortedByCoord.out.bamENCODE_DATA/set41_spikeins/STAR_ENCORE2_trimmed_file_linksbamalignmentsknockdown followed by RNA-seqGraveley Lab1967GRCh38V40NT-BGHcLV05-1D_CGTACG_HJMKJBCX2_L001_R1_001.filtered.trimmed.paired.fastq.gz,NT-BGHcLV05-1D_CGTACG_HJMKJBCX2_L001_R2_001.filtered.trimmed.paired.fastq.gzENCORE227467
    NT-BGHcLV05-1D_Signal.Unique.strand+.bwENCODE_DATA/set41_spikeins/STAR_ENCORE2_trimmed_file_linksbigWig+uniqueplus strand signal of unique readsknockdown followed by RNA-seqGraveley Lab1967GRCh38V40NT-BGHcLV05-1D/Aligned.sortedByCoord.out.bamENCORE227495
    NT-BGHcLV05-1D_Signal.Unique.strand-.bwENCODE_DATA/set41_spikeins/STAR_ENCORE2_trimmed_file_linksbigWig-uniqueminus strand signal of unique readsknockdown followed by RNA-seqGraveley Lab1967GRCh38V40NT-BGHcLV05-1D/Aligned.sortedByCoord.out.bamENCORE227523
    NT-BGHcLV05-1D_Signal.UniqueMultiple.strand+.bwENCODE_DATA/set41_spikeins/STAR_ENCORE2_trimmed_file_linksbigWig+allplus strand signal of all readsknockdown followed by RNA-seqGraveley Lab1967GRCh38V40NT-BGHcLV05-1D/Aligned.sortedByCoord.out.bamENCORE227551
    NT-BGHcLV05-1D_Signal.UniqueMultiple.strand-.bwENCODE_DATA/set41_spikeins/STAR_ENCORE2_trimmed_file_linksbigWig-allminus strand signal of all readsknockdown followed by RNA-seqGraveley Lab1967GRCh38V40NT-BGHcLV05-1D/Aligned.sortedByCoord.out.bamENCORE227579
    NT-BGHcLV05-1D_quant.sfENCODE_DATA/set41_spikeins/salmon_ENCORE2transcript_quantificationtranscript quantificationsknockdown followed by RNA-seqGraveley Lab1967GRCh38V40NT-BGHcLV05-1D_CGTACG_HJMKJBCX2_L001_R1_001.filtered.trimmed.paired.fastq.gz,NT-BGHcLV05-1D_CGTACG_HJMKJBCX2_L001_R2_001.filtered.trimmed.paired.fastq.gzENCORE227607
    NT-BGHcLV05-2E_S34_R1_001.filtered.trimmed.paired.fastq.gzENCODE_DATA/set44_H/fastq_trimmedfastqreadsknockdown followed by RNA-seqGraveley Lab170NovaSeq6000100paired-ended1ENCODE4198
    NT-BGHcLV05-2E_S34_R2_001.filtered.trimmed.paired.fastq.gzENCODE_DATA/set44_H/fastq_trimmedfastqreadsknockdown followed by RNA-seqGraveley Lab170NovaSeq6000100paired-ended2ENCODE4250
    NT-BGHcLV05-2C_GAGTGG_ACBYWVANXX_L003_001.R1.fastq.gzENCODE_DATA/set40_H/fastqfastqreadsknockdown followed by RNA-seqGraveley Lab328HiSeq2500100paired-ended1ENCODE4660
    NT-BGHcLV05-2C_GAGTGG_ACBYWVANXX_L003_001.R2.fastq.gzENCODE_DATA/set40_H/fastqfastqreadsknockdown followed by RNA-seqGraveley Lab328HiSeq2500100paired-ended2ENCODE4702
    NT-BGHcLV05-2B_GAGTGG_ACBE67ANXX_L004_001.R1.fastq.gzENCODE_DATA/set39_H/fastqfastqreadsknockdown followed by RNA-seqGraveley Lab1702HiSeq2500100paired-ended1ENCODE322279
    NT-BGHcLV05-2B_GAGTGG_ACBE67ANXX_L004_001.R2.fastq.gzENCODE_DATA/set39_H/fastqfastqreadsknockdown followed by RNA-seqGraveley Lab1702HiSeq2500100paired-ended2ENCODE322303
    NT-BGHcLV05-2B_Aligned.sortedByCoord.out.bamENCODE_DATA/set39_H/STAR_ENCORE2_file_linksbamalignmentsknockdown followed by RNA-seqGraveley Lab1702GRCh38V40NT-BGHcLV05-2B_GAGTGG_ACBE67ANXX_L004_001.R1.fastq.gz,NT-BGHcLV05-2B_GAGTGG_ACBE67ANXX_L004_001.R2.fastq.gzENCORE222327
    NT-BGHcLV05-2B_Signal.Unique.strand+.bwENCODE_DATA/set39_H/STAR_ENCORE2_file_linksbigWig+uniqueplus strand signal of unique readsknockdown followed by RNA-seqGraveley Lab1702GRCh38V40NT-BGHcLV05-2B/Aligned.sortedByCoord.out.bamENCORE222351
    NT-BGHcLV05-2B_Signal.Unique.strand-.bwENCODE_DATA/set39_H/STAR_ENCORE2_file_linksbigWig-uniqueminus strand signal of unique readsknockdown followed by RNA-seqGraveley Lab1702GRCh38V40NT-BGHcLV05-2B/Aligned.sortedByCoord.out.bamENCORE222375
    NT-BGHcLV05-2B_Signal.UniqueMultiple.strand+.bwENCODE_DATA/set39_H/STAR_ENCORE2_file_linksbigWig+allplus strand signal of all readsknockdown followed by RNA-seqGraveley Lab1702GRCh38V40NT-BGHcLV05-2B/Aligned.sortedByCoord.out.bamENCORE222399
    NT-BGHcLV05-2B_Signal.UniqueMultiple.strand-.bwENCODE_DATA/set39_H/STAR_ENCORE2_file_linksbigWig-allminus strand signal of all readsknockdown followed by RNA-seqGraveley Lab1702GRCh38V40NT-BGHcLV05-2B/Aligned.sortedByCoord.out.bamENCORE222423
    NT-BGHcLV05-2B_quant.sfENCODE_DATA/set39_H/salmon_ENCORE2transcript_quantificationtranscript quantificationsknockdown followed by RNA-seqGraveley Lab1702GRCh38V40NT-BGHcLV05-2B_GAGTGG_ACBE67ANXX_L004_001.R1.fastq.gz,NT-BGHcLV05-2B_GAGTGG_ACBE67ANXX_L004_001.R2.fastq.gzENCORE222447
    NT_BGHcLV05-2_TAGCTT_L002_001.R1.fastq.gzENCODE_DATA/BGHcLV05/fastqfastqreadsknockdown followed by RNA-seqGraveley Lab1674HiSeq2500100paired-ended1ENCODE323143
    NT_BGHcLV05-2_TAGCTT_L002_001.R2.fastq.gzENCODE_DATA/BGHcLV05/fastqfastqreadsknockdown followed by RNA-seqGraveley Lab1674HiSeq2500100paired-ended2ENCODE323155
    NT_BGHcLV05-2_Aligned.sortedByCoord.out.bamENCODE_DATA/BGHcLV05/STAR_ENCORE2_file_linksbamalignmentsknockdown followed by RNA-seqGraveley Lab1674GRCh38V40NT_BGHcLV05-2_TAGCTT_L002_001.R1.fastq.gz,NT_BGHcLV05-2_TAGCTT_L002_001.R2.fastq.gzENCORE223167
    NT_BGHcLV05-2_Signal.Unique.strand+.bwENCODE_DATA/BGHcLV05/STAR_ENCORE2_file_linksbigWig+uniqueplus strand signal of unique readsknockdown followed by RNA-seqGraveley Lab1674GRCh38V40NT_BGHcLV05-2/Aligned.sortedByCoord.out.bamENCORE223179
    NT_BGHcLV05-2_Signal.Unique.strand-.bwENCODE_DATA/BGHcLV05/STAR_ENCORE2_file_linksbigWig-uniqueminus strand signal of unique readsknockdown followed by RNA-seqGraveley Lab1674GRCh38V40NT_BGHcLV05-2/Aligned.sortedByCoord.out.bamENCORE223191
    NT_BGHcLV05-2_Signal.UniqueMultiple.strand+.bwENCODE_DATA/BGHcLV05/STAR_ENCORE2_file_linksbigWig+allplus strand signal of all readsknockdown followed by RNA-seqGraveley Lab1674GRCh38V40NT_BGHcLV05-2/Aligned.sortedByCoord.out.bamENCORE223203
    NT_BGHcLV05-2_Signal.UniqueMultiple.strand-.bwENCODE_DATA/BGHcLV05/STAR_ENCORE2_file_linksbigWig-allminus strand signal of all readsknockdown followed by RNA-seqGraveley Lab1674GRCh38V40NT_BGHcLV05-2/Aligned.sortedByCoord.out.bamENCORE223215
    NT_BGHcLV05-2_quant.sfENCODE_DATA/BGHcLV05/salmon_ENCORE2transcript_quantificationtranscript quantificationsknockdown followed by RNA-seqGraveley Lab1674GRCh38V40NT_BGHcLV05-2_TAGCTT_L002_001.R1.fastq.gz,NT_BGHcLV05-2_TAGCTT_L002_001.R2.fastq.gzENCORE223227
    NT-BGHcLV05-2C_Aligned.sortedByCoord.out.bamENCODE_DATA/set40_H/STAR_ENCORE2_file_linksbamalignmentsknockdown followed by RNA-seqGraveley Lab328GRCh38V40NT-BGHcLV05-2C_GAGTGG_ACBYWVANXX_L003_001.R1.fastq.gz,NT-BGHcLV05-2C_GAGTGG_ACBYWVANXX_L003_001.R2.fastq.gzENCORE223263
    NT-BGHcLV05-2C_Signal.Unique.strand+.bwENCODE_DATA/set40_H/STAR_ENCORE2_file_linksbigWig+uniqueplus strand signal of unique readsknockdown followed by RNA-seqGraveley Lab328GRCh38V40NT-BGHcLV05-2C/Aligned.sortedByCoord.out.bamENCORE223297
    NT-BGHcLV05-2C_Signal.Unique.strand-.bwENCODE_DATA/set40_H/STAR_ENCORE2_file_linksbigWig-uniqueminus strand signal of unique readsknockdown followed by RNA-seqGraveley Lab328GRCh38V40NT-BGHcLV05-2C/Aligned.sortedByCoord.out.bamENCORE223331
    NT-BGHcLV05-2C_Signal.UniqueMultiple.strand+.bwENCODE_DATA/set40_H/STAR_ENCORE2_file_linksbigWig+allplus strand signal of all readsknockdown followed by RNA-seqGraveley Lab328GRCh38V40NT-BGHcLV05-2C/Aligned.sortedByCoord.out.bamENCORE223365
    NT-BGHcLV05-2C_Signal.UniqueMultiple.strand-.bwENCODE_DATA/set40_H/STAR_ENCORE2_file_linksbigWig-allminus strand signal of all readsknockdown followed by RNA-seqGraveley Lab328GRCh38V40NT-BGHcLV05-2C/Aligned.sortedByCoord.out.bamENCORE223399
    NT-BGHcLV05-2C_quant.sfENCODE_DATA/set40_H/salmon_ENCORE2transcript_quantificationtranscript quantificationsknockdown followed by RNA-seqGraveley Lab328GRCh38V40NT-BGHcLV05-2C_GAGTGG_ACBYWVANXX_L003_001.R1.fastq.gz,NT-BGHcLV05-2C_GAGTGG_ACBYWVANXX_L003_001.R2.fastq.gzENCORE223433
    NT-BGHcLV05-2E_Aligned.sortedByCoord.out.bamENCODE_DATA/set44_H/STAR_ENCORE2_trimmed_file_linksbamalignmentsknockdown followed by RNA-seqGraveley Lab170GRCh38V40NT-BGHcLV05-2E_S34_R1_001.filtered.trimmed.paired.fastq.gz,NT-BGHcLV05-2E_S34_R2_001.filtered.trimmed.paired.fastq.gzENCORE224918
    NT-BGHcLV05-2E_Signal.Unique.strand+.bwENCODE_DATA/set44_H/STAR_ENCORE2_trimmed_file_linksbigWig+uniqueplus strand signal of unique readsknockdown followed by RNA-seqGraveley Lab170GRCh38V40NT-BGHcLV05-2E/Aligned.sortedByCoord.out.bamENCORE224970
    NT-BGHcLV05-2E_Signal.Unique.strand-.bwENCODE_DATA/set44_H/STAR_ENCORE2_trimmed_file_linksbigWig-uniqueminus strand signal of unique readsknockdown followed by RNA-seqGraveley Lab170GRCh38V40NT-BGHcLV05-2E/Aligned.sortedByCoord.out.bamENCORE225022
    NT-BGHcLV05-2E_Signal.UniqueMultiple.strand+.bwENCODE_DATA/set44_H/STAR_ENCORE2_trimmed_file_linksbigWig+allplus strand signal of all readsknockdown followed by RNA-seqGraveley Lab170GRCh38V40NT-BGHcLV05-2E/Aligned.sortedByCoord.out.bamENCORE225074
    NT-BGHcLV05-2E_Signal.UniqueMultiple.strand-.bwENCODE_DATA/set44_H/STAR_ENCORE2_trimmed_file_linksbigWig-allminus strand signal of all readsknockdown followed by RNA-seqGraveley Lab170GRCh38V40NT-BGHcLV05-2E/Aligned.sortedByCoord.out.bamENCORE225126
    NT-BGHcLV05-2E_quant.sfENCODE_DATA/set44_H/salmon_ENCORE2transcript_quantificationtranscript quantificationsknockdown followed by RNA-seqGraveley Lab170GRCh38V40NT-BGHcLV05-2E_S34_R1_001.filtered.trimmed.paired.fastq.gz,NT-BGHcLV05-2E_S34_R2_001.filtered.trimmed.paired.fastq.gzENCORE225178
    NT-BGHcLV05-2D_S1_R1_001.fastq.gzENCODE_DATA/set41_spikeins/fastq_trimmedfastqreadsknockdown followed by RNA-seqGraveley Lab1968HiSeq2500100paired-ended1ENCORE227412
    NT-BGHcLV05-2D_S1_R2_001.fastq.gzENCODE_DATA/set41_spikeins/fastq_trimmedfastqreadsknockdown followed by RNA-seqGraveley Lab1968HiSeq2500100paired-ended2ENCORE227440
    NT-BGHcLV05-2D_Aligned.sortedByCoord.out.bamENCODE_DATA/set41_spikeins/STAR_ENCORE2_trimmed_file_linksbamalignmentsknockdown followed by RNA-seqGraveley Lab1968GRCh38V40NT-BGHcLV05-2D_S1_R1_001.fastq.gz,NT-BGHcLV05-2D_S1_R2_001.fastq.gzENCORE227468
    NT-BGHcLV05-2D_Signal.Unique.strand+.bwENCODE_DATA/set41_spikeins/STAR_ENCORE2_trimmed_file_linksbigWig+uniqueplus strand signal of unique readsknockdown followed by RNA-seqGraveley Lab1968GRCh38V40NT-BGHcLV05-2D/Aligned.sortedByCoord.out.bamENCORE227496
    NT-BGHcLV05-2D_Signal.Unique.strand-.bwENCODE_DATA/set41_spikeins/STAR_ENCORE2_trimmed_file_linksbigWig-uniqueminus strand signal of unique readsknockdown followed by RNA-seqGraveley Lab1968GRCh38V40NT-BGHcLV05-2D/Aligned.sortedByCoord.out.bamENCORE227524
    NT-BGHcLV05-2D_Signal.UniqueMultiple.strand+.bwENCODE_DATA/set41_spikeins/STAR_ENCORE2_trimmed_file_linksbigWig+allplus strand signal of all readsknockdown followed by RNA-seqGraveley Lab1968GRCh38V40NT-BGHcLV05-2D/Aligned.sortedByCoord.out.bamENCORE227552
    NT-BGHcLV05-2D_Signal.UniqueMultiple.strand-.bwENCODE_DATA/set41_spikeins/STAR_ENCORE2_trimmed_file_linksbigWig-allminus strand signal of all readsknockdown followed by RNA-seqGraveley Lab1968GRCh38V40NT-BGHcLV05-2D/Aligned.sortedByCoord.out.bamENCORE227580
    NT-BGHcLV05-2D_quant.sfENCODE_DATA/set41_spikeins/salmon_ENCORE2transcript_quantificationtranscript quantificationsknockdown followed by RNA-seqGraveley Lab1968GRCh38V40NT-BGHcLV05-2D_S1_R1_001.fastq.gz,NT-BGHcLV05-2D_S1_R2_001.fastq.gzENCORE227608