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non-target RNA-Seq in HepG2



non-target      shRNA in HepG2      Control: NT-BGHLV37-D

General Information

List KD experiments controlled by BGHLV37-1 and BGHLV37-2


NT-BGHLV37-1C,NT-BGHLV37-2C (alias:non-target-BGHLV37-1C,non-target-BGHLV37-2C):
  • ABT1-BGHLV37-HepG2
  • AQR-BGHLV37-HepG2
  • FUBP1-BGHLV37-HepG2
  • WDR3-BGHLV37-HepG2
  • WRN-BGHLV37-HepG2
  • XPO1-BGHLV37-HepG2
  • XRN1-BGHLV37-HepG2
  • YTHDC2-BGHLV37-HepG2
  • YWHAG-BGHLV37-HepG2

    • NT-BGHLV37-1,NT-BGHLV37-2 (alias:NT_BGHLV37-1,NT_BGHLV37-2):
  • AUH-BGHLV37-HepG2
  • ETF1-BGHLV37-HepG2
  • RBM22-BGHLV37-HepG2
  • SRFBP1-BGHLV37-HepG2
  • SSB-BGHLV37-HepG2

    • NT-BGHLV37-1B,NT-BGHLV37-2B (alias:NT-BGHLV37-1B,NT-BGHLV37-2B):
  • PRPF4-BGHLV37-HepG2_A
  • ZC3H8-BGHLV37-HepG2_A

    • NT-BGHLV37-1D,NT-BGHLV37-2D:
  • PRPF4-BGHLV37-HepG2
  • ZC3H8-BGHLV37-HepG2




    • Experiment Information (Status: Released)
    BGHLV37-1BGHLV37-2
    idx913914
    TRCN#_or_BGC#
    shRNA_or_gRNA_sequenceCAACAAGATGAAGAGCACCAACAACAAGATGAAGAGCACCAA
    PAM
    Namenon-targetnon-target
    Sample_IDBGHLV37-1BGHLV37-2
    transduction_Date9/1/169/1/16
    days
    RBP_namenon-targetnon-target
    qPCR_result
    Ave_qPCR
    RT-qPCR_primer-F
    RT-qPCR_primer-R
    protein_conc03505
    WB_result
    Ave_WB
    WB_DONE_date
    MW
    IP
    antibody_Cat#
    Antibody DCC ID
    submitted_to_DCC_date
    Rep1_TPM00
    Rep2_TPM00
    Action
    Library_start_date11/3/1611/3/16
    repeat_library05/11/1705/11/17
    Note
    ID30063007




    Western Blot
    Western Blot info was not avaliable




    Experiment Status
    BGHLV37-1BGHLV37-1BGHLV37-1BGHLV37-1BGHLV37-2BGHLV37-2BGHLV37-2BGHLV37-2
    Sample_IDBGHLV37-1BGHLV37-1BGHLV37-1BGHLV37-1BGHLV37-2BGHLV37-2BGHLV37-2BGHLV37-2
    Sample Namenon-target-BGHLV37-1CNT_BGHLV37-1NT-BGHLV37-1Bnon-target-BGHLV37-2CNT_BGHLV37-2NT-BGHLV37-2B
    Sample Namenon-target-BGHLV37-1CNT_BGHLV37-1NT-BGHLV37-1BNT-BGHLV37-1Dnon-target-BGHLV37-2CNT_BGHLV37-2NT-BGHLV37-2BNT-BGHLV37-2D
    RBPnon-targetnon-targetnon-targetnon-targetnon-targetnon-targetnon-targetnon-target
    Cell_LineHepG2HepG2HepG2HepG2HepG2HepG2HepG2HepG2
    Exp UID
    StatusReleasedReleasedReleasedReleasedReleasedReleasedReleasedReleased
    Status_date2021-03-182016-12-122017-11-202022-03-072021-03-182016-12-122017-11-202022-03-07
    ProjectENCODE4ENCODE3ENCODE3ENCODE4ENCODE4ENCODE3ENCODE3ENCODE4
    Note
    ID981297133510441991298133610442




    Library-Prep Information
    BGHLV37-1BGHLV37-1BGHLV37-1BGHLV37-1BGHLV37-2BGHLV37-2BGHLV37-2BGHLV37-2
    Sample #15611662
    Sample NameNT-BGHLV37-1CNT-BGHLV37-1NT-BGHLV37-1BNT-BGHLV37-1DNT-BGHLV37-2CNT-BGHLV37-2NT-BGHLV37-2BNT-BGHLV37-2D
    Sample_Name_Aliasnon-target-BGHLV37-1CNT_BGHLV37-1NT-BGHLV37-1Bnon-target-BGHLV37-2CNT_BGHLV37-2NT-BGHLV37-2B
    Index Well PositionS01S18S05S05S02S19S06S06
    Index_tableIDT_TruSeqSingleIndex_24IDT_TruSeqSingleIndex_24IDT_TruSeqSingleIndex_24IDT_TruSeqSingleIndex_24IDT_TruSeqSingleIndex_24IDT_TruSeqSingleIndex_24IDT_TruSeqSingleIndex_24IDT_TruSeqSingleIndex_24
    LibPrep_date2018-01-022016-11-032017-05-112018-11-192018-01-022016-11-032017-05-112018-11-19
    Lib_IDLib-180102Lib-161103Lib-170511Lib-181119Lib-180102Lib-161103Lib-170511Lib-181119
    Tecan_Location
    Tecan
    Tecan_date
    Size_bp300283311293
    Peak_Molarity17.3073.0029.6066.40
    libSampleQC_DNA_WellDNA_Library_set40/set1/A5.pngDNA_Library_LV37-38/set1/A3.pngDNA_Library_set39/set2/E5.pngDNA_Library_set41/set1/E7.pngDNA_Library_set40/set1/B5.pngDNA_Library_LV37-38/set1/B3.pngDNA_Library_set39/set2/F5.pngDNA_Library_set41/set1/F7.png
    RIN10.010.010.010.09.69.69.69.6
    libSample_RNA_WellRNA_Library_LV37_38/set2/D2.pngRNA_Library_LV37_38/set2/D2.pngRNA_Library_LV37_38/set2/D2.pngRNA_Library_LV37_38/set2/D2.pngRNA_Library_LV37_38/set1/B1.pngRNA_Library_LV37_38/set1/B1.pngRNA_Library_LV37_38/set1/B1.pngRNA_Library_LV37_38/set1/B1.png
    SampleQC_methodTapeStationTapeStationTapeStationTapeStation
    SampleQC_date2018-01-022022-03-012018-01-022022-03-01
    Sample_IDBGHLV37-1BGHLV37-1BGHLV37-1BGHLV37-1BGHLV37-2BGHLV37-2BGHLV37-2BGHLV37-2
    RBPNTNTNTNTNTNTNTNT
    Batch_IDBGHLV37BGHLV37BGHLV37BGHLV37BGHLV37BGHLV37BGHLV37BGHLV37
    WB_result0.0000.0000.0000.0000.0000.0000.0000.000
    Library DescriptionTruSeq mRNATruSeq mRNATruSeq mRNATruSeq mRNATruSeq mRNATruSeq mRNATruSeq mRNATruSeq mRNA
    Repeat_Library_SuffixCBDCBD
    Lib_StatusSendToSequenceSendToSequenceSendToSequenceSendToSequenceSendToSequenceSendToSequenceSendToSequenceSendToSequence
    ProjectENCODE4ENCODE3ENCODE3ENCODE4ENCODE4ENCODE3ENCODE3ENCODE4
    ID938298230323238939298330333239




    Sequencing Information
    BGHLV37-1BGHLV37-1BGHLV37-1BGHLV37-1BGHLV37-2BGHLV37-2BGHLV37-2BGHLV37-2BGHLV37-2
    Sample_IDBGHLV37-1BGHLV37-1BGHLV37-1BGHLV37-1BGHLV37-2BGHLV37-2BGHLV37-2BGHLV37-2BGHLV37-2
    Sample Namenon-target-BGHLV37-1CNT_BGHLV37-1NT-BGHLV37-1BNT-BGHLV37-1Dnon-target-BGHLV37-2Cnon-target-BGHLV37-2CNT_BGHLV37-2NT-BGHLV37-2BNT-BGHLV37-2D
    Pool IDPool-180109Pool-161129Pool-170911Pool-181119Pool-180109Pool-180316Pool-161129Pool-170911Pool-181119
    LocalServer_folderset40_Hset37set39_Hset41_spikeinsset40_Hset40_Hset37set39_Hset41_spikeins
    total_reads31,240,11074,527,40251,510,63028,047,32416,674,40630,450,37692,745,33659,687,86228,550,428
    total_aligned_reads26,489,58665,172,51644,945,32626,086,95614,117,05426,142,98483,302,35652,213,06026,914,106
    unique_aligned_reads24,928,35061,384,65242,298,05624,521,16013,284,95624,602,67078,346,74849,057,14825,296,936
    percent_uniqueAligned0.797960.823650.821150.874280.796730.807960.844750.821890.88604
    correlation_replicates0.9992690.9889520.9993150.9989720.9992690.9889520.9993150.998972
    spikein_reads9,980332,7585460,0528,72015,684463,1008879,890
    percent_spikeins0.000320.004460.002140.000520.000520.004990.00280
    original_ReadLength100100100100100100100100100
    QC_StatusSubmittedSubmittedSubmittedSubmittedSubmittedSubmittedSubmittedSubmittedSubmitted
    ID341163116871951342398163216881952




    Data Submission Information
    BGHLV37-1BGHLV37-1BGHLV37-1BGHLV37-1BGHLV37-1BGHLV37-1BGHLV37-1BGHLV37-1BGHLV37-1BGHLV37-2BGHLV37-2BGHLV37-2BGHLV37-2BGHLV37-2BGHLV37-2BGHLV37-2
    ENCODE_aliasbrenton-graveley:NT-BGHLV37-Cbrenton-graveley:NT_BGHLV37-1brenton-graveley:L-non-target-BGHLV37-1Cbrenton-graveley:non-target-BGHLV37-1C_ATCACG_ACBYWVANXX_L001_001.R1.fastq.gzbrenton-graveley:non-target-BGHLV37-1C_ATCACG_ACBYWVANXX_L001_001.R2.fastq.gzbrenton-graveley:NT_BGHLV37brenton-graveley:NT-BGHLV37-Bbrenton-graveley:NT-BGHLV37-Dbrenton-graveley:L-NT-BGHLV37-1Dbrenton-graveley:NT_BGHLV37-2brenton-graveley:L-non-target-BGHLV37-2Cbrenton-graveley:non-target-BGHLV37-2C_CGATGT_ACBYWVANXX_L001_001.R1.fastq.gzbrenton-graveley:non-target-BGHLV37-2C_CGATGT_AHFKCFBCX2_L001_001.R1.fastq.gzbrenton-graveley:non-target-BGHLV37-2C_CGATGT_ACBYWVANXX_L001_001.R2.fastq.gzbrenton-graveley:non-target-BGHLV37-2C_CGATGT_AHFKCFBCX2_L001_001.R2.fastq.gzbrenton-graveley:L-NT-BGHLV37-2D
    ENCODE_accessionENCSR225PRVENCBS604VEZENCLB705YFNENCFF965LFRENCFF672JOWENCSR997HCQENCSR584UYKENCSR093ERJENCLB849ENVENCBS781DTOENCLB285DBRENCFF735VWUENCFF143ZSFENCFF132NQVENCFF333DWVENCLB193FKR
    object_typeexperimentbiosamplelibraryfile_fastq1file_fastq2experimentexperimentexperimentlibrarybiosamplelibraryfile_fastq1file_fastq1file_fastq2file_fastq2library
    assay_typeknockdown followed by RNA-seqknockdown followed by RNA-seqknockdown followed by RNA-seqknockdown followed by RNA-seqknockdown followed by RNA-seqknockdown followed by RNA-seqknockdown followed by RNA-seqknockdown followed by RNA-seqknockdown followed by RNA-seqknockdown followed by RNA-seqknockdown followed by RNA-seqknockdown followed by RNA-seqknockdown followed by RNA-seqknockdown followed by RNA-seqknockdown followed by RNA-seqknockdown followed by RNA-seq
    Sample_IDBGHLV37-1BGHLV37-1BGHLV37-1BGHLV37-1BGHLV37-1BGHLV37-1BGHLV37-1BGHLV37-1BGHLV37-1BGHLV37-2BGHLV37-2BGHLV37-2BGHLV37-2BGHLV37-2BGHLV37-2BGHLV37-2
    Sample Namenon-target-BGHLV37-1CNT_BGHLV37-1non-target-BGHLV37-1Cnon-target-BGHLV37-1Cnon-target-BGHLV37-1CNT_BGHLV37-1NT-BGHLV37-1BNT-BGHLV37-1DNT-BGHLV37-1DNT_BGHLV37-2non-target-BGHLV37-2Cnon-target-BGHLV37-2Cnon-target-BGHLV37-2Cnon-target-BGHLV37-2Cnon-target-BGHLV37-2CNT-BGHLV37-2D
    SelectedYesYesYesYesYesYesYesYesYesYesYesYesYesYesYesYes
    StatusReleasedReleasedReleasedReleasedReleasedReleasedReleasedReleasedReleasedReleasedReleasedReleasedReleasedReleasedReleasedReleased
    Status_Date2022-03-072019-03-132022-03-072022-03-072022-03-072022-03-072022-03-072022-03-072022-03-072019-03-132022-03-072022-03-072022-03-072022-03-072022-03-072022-03-07
    ProjectENCODE4ENCODE4ENCODE4ENCODE4ENCODE4ENCODE3ENCODE3ENCODE4ENCODE4ENCODE4ENCODE4ENCODE4ENCODE4ENCODE4ENCODE4ENCODE4
    LV37_biosample_protocolLV40_library_protocolLV41_library_protocol_spikeinsLV37_biosample_protocolLV40_library_protocolLV41_library_protocol_spikeins
    protocol_URLNT_BGHLV37-1.pdfL-non-target-BGHLV37-1C.pdfL-NT-BGHLV37-1D.pdfNT_BGHLV37-2.pdfL-non-target-BGHLV37-2C.pdfL-NT-BGHLV37-2D.pdf
    ID1441148015361586162331883207737473891481153715871588162416257390




    File Information
    file_namefile_pathfile_formatoutput_typeassay_typelabSample IDplatformread_lengthrun_typepaired_endassemblygenome_annotationderived_fromcontrolled_byProjectNoteFILE_ID
    non-target-BGHLV37-1C_ATCACG_ACBYWVANXX_L001_001.R1.fastq.gzENCODE_DATA/set40_H/fastqfastqreadsknockdown followed by RNA-seqGraveley Lab341HiSeq2500100paired-ended1ENCODE4656
    non-target-BGHLV37-1C_ATCACG_ACBYWVANXX_L001_001.R2.fastq.gzENCODE_DATA/set40_H/fastqfastqreadsknockdown followed by RNA-seqGraveley Lab341HiSeq2500100paired-ended2ENCODE4698
    NT_BGHLV37-1_GTCCGC_L005_001.R1.fastq.gzENCODE_DATA/set37/fastqfastqreadsknockdown followed by RNA-seqGraveley Lab1631HiSeq2500100paired-ended1ENCODE322038
    NT_BGHLV37-1_GTCCGC_L005_001.R2.fastq.gzENCODE_DATA/set37/fastqfastqreadsknockdown followed by RNA-seqGraveley Lab1631HiSeq2500100paired-ended2ENCODE322054
    NT_BGHLV37-1_Aligned.sortedByCoord.out.bamENCODE_DATA/set37/STAR_ENCORE2_file_linksbamalignmentsknockdown followed by RNA-seqGraveley Lab1631GRCh38V40NT_BGHLV37-1_GTCCGC_L005_001.R1.fastq.gz,NT_BGHLV37-1_GTCCGC_L005_001.R2.fastq.gzENCORE222070
    NT_BGHLV37-1_Signal.Unique.strand+.bwENCODE_DATA/set37/STAR_ENCORE2_file_linksbigWig+uniqueplus strand signal of unique readsknockdown followed by RNA-seqGraveley Lab1631GRCh38V40NT_BGHLV37-1/Aligned.sortedByCoord.out.bamENCORE222086
    NT_BGHLV37-1_Signal.Unique.strand-.bwENCODE_DATA/set37/STAR_ENCORE2_file_linksbigWig-uniqueminus strand signal of unique readsknockdown followed by RNA-seqGraveley Lab1631GRCh38V40NT_BGHLV37-1/Aligned.sortedByCoord.out.bamENCORE222102
    NT_BGHLV37-1_Signal.UniqueMultiple.strand+.bwENCODE_DATA/set37/STAR_ENCORE2_file_linksbigWig+allplus strand signal of all readsknockdown followed by RNA-seqGraveley Lab1631GRCh38V40NT_BGHLV37-1/Aligned.sortedByCoord.out.bamENCORE222118
    NT_BGHLV37-1_Signal.UniqueMultiple.strand-.bwENCODE_DATA/set37/STAR_ENCORE2_file_linksbigWig-allminus strand signal of all readsknockdown followed by RNA-seqGraveley Lab1631GRCh38V40NT_BGHLV37-1/Aligned.sortedByCoord.out.bamENCORE222134
    NT_BGHLV37-1_quant.sfENCODE_DATA/set37/salmon_ENCORE2transcript_quantificationtranscript quantificationsknockdown followed by RNA-seqGraveley Lab1631GRCh38V40NT_BGHLV37-1_GTCCGC_L005_001.R1.fastq.gz,NT_BGHLV37-1_GTCCGC_L005_001.R2.fastq.gzENCORE222150
    NT-BGHLV37-1B_ACAGTG_ACBE67ANXX_L001_001.R1.fastq.gzENCODE_DATA/set39_H/fastqfastqreadsknockdown followed by RNA-seqGraveley Lab1687HiSeq2500100paired-ended1ENCODE322282
    NT-BGHLV37-1B_ACAGTG_ACBE67ANXX_L001_001.R2.fastq.gzENCODE_DATA/set39_H/fastqfastqreadsknockdown followed by RNA-seqGraveley Lab1687HiSeq2500100paired-ended2ENCODE322306
    NT-BGHLV37-1B_Aligned.sortedByCoord.out.bamENCODE_DATA/set39_H/STAR_ENCORE2_file_linksbamalignmentsknockdown followed by RNA-seqGraveley Lab1687GRCh38V40NT-BGHLV37-1B_ACAGTG_ACBE67ANXX_L001_001.R1.fastq.gz,NT-BGHLV37-1B_ACAGTG_ACBE67ANXX_L001_001.R2.fastq.gzENCORE222330
    NT-BGHLV37-1B_Signal.Unique.strand+.bwENCODE_DATA/set39_H/STAR_ENCORE2_file_linksbigWig+uniqueplus strand signal of unique readsknockdown followed by RNA-seqGraveley Lab1687GRCh38V40NT-BGHLV37-1B/Aligned.sortedByCoord.out.bamENCORE222354
    NT-BGHLV37-1B_Signal.Unique.strand-.bwENCODE_DATA/set39_H/STAR_ENCORE2_file_linksbigWig-uniqueminus strand signal of unique readsknockdown followed by RNA-seqGraveley Lab1687GRCh38V40NT-BGHLV37-1B/Aligned.sortedByCoord.out.bamENCORE222378
    NT-BGHLV37-1B_Signal.UniqueMultiple.strand+.bwENCODE_DATA/set39_H/STAR_ENCORE2_file_linksbigWig+allplus strand signal of all readsknockdown followed by RNA-seqGraveley Lab1687GRCh38V40NT-BGHLV37-1B/Aligned.sortedByCoord.out.bamENCORE222402
    NT-BGHLV37-1B_Signal.UniqueMultiple.strand-.bwENCODE_DATA/set39_H/STAR_ENCORE2_file_linksbigWig-allminus strand signal of all readsknockdown followed by RNA-seqGraveley Lab1687GRCh38V40NT-BGHLV37-1B/Aligned.sortedByCoord.out.bamENCORE222426
    NT-BGHLV37-1B_quant.sfENCODE_DATA/set39_H/salmon_ENCORE2transcript_quantificationtranscript quantificationsknockdown followed by RNA-seqGraveley Lab1687GRCh38V40NT-BGHLV37-1B_ACAGTG_ACBE67ANXX_L001_001.R1.fastq.gz,NT-BGHLV37-1B_ACAGTG_ACBE67ANXX_L001_001.R2.fastq.gzENCORE222450
    non-target-BGHLV37-1C_Aligned.sortedByCoord.out.bamENCODE_DATA/set40_H/STAR_ENCORE2_file_linksbamalignmentsknockdown followed by RNA-seqGraveley Lab341GRCh38V40non-target-BGHLV37-1C_ATCACG_ACBYWVANXX_L001_001.R1.fastq.gz,non-target-BGHLV37-1C_ATCACG_ACBYWVANXX_L001_001.R2.fastq.gzENCORE223260
    non-target-BGHLV37-1C_Signal.Unique.strand+.bwENCODE_DATA/set40_H/STAR_ENCORE2_file_linksbigWig+uniqueplus strand signal of unique readsknockdown followed by RNA-seqGraveley Lab341GRCh38V40non-target-BGHLV37-1C/Aligned.sortedByCoord.out.bamENCORE223294
    non-target-BGHLV37-1C_Signal.Unique.strand-.bwENCODE_DATA/set40_H/STAR_ENCORE2_file_linksbigWig-uniqueminus strand signal of unique readsknockdown followed by RNA-seqGraveley Lab341GRCh38V40non-target-BGHLV37-1C/Aligned.sortedByCoord.out.bamENCORE223328
    non-target-BGHLV37-1C_Signal.UniqueMultiple.strand+.bwENCODE_DATA/set40_H/STAR_ENCORE2_file_linksbigWig+allplus strand signal of all readsknockdown followed by RNA-seqGraveley Lab341GRCh38V40non-target-BGHLV37-1C/Aligned.sortedByCoord.out.bamENCORE223362
    non-target-BGHLV37-1C_Signal.UniqueMultiple.strand-.bwENCODE_DATA/set40_H/STAR_ENCORE2_file_linksbigWig-allminus strand signal of all readsknockdown followed by RNA-seqGraveley Lab341GRCh38V40non-target-BGHLV37-1C/Aligned.sortedByCoord.out.bamENCORE223396
    non-target-BGHLV37-1C_quant.sfENCODE_DATA/set40_H/salmon_ENCORE2transcript_quantificationtranscript quantificationsknockdown followed by RNA-seqGraveley Lab341GRCh38V40non-target-BGHLV37-1C_ATCACG_ACBYWVANXX_L001_001.R1.fastq.gz,non-target-BGHLV37-1C_ATCACG_ACBYWVANXX_L001_001.R2.fastq.gzENCORE223430
    NT-BGHLV37-1D_ACAGTG_HJMK5BCX2_L001_R1_001.filtered.trimmed.paired.fastq.gzENCODE_DATA/set41_spikeins/fastq_trimmedfastqreadsknockdown followed by RNA-seqGraveley Lab1951HiSeq2500100paired-ended1ENCORE227413
    NT-BGHLV37-1D_ACAGTG_HJMK5BCX2_L001_R2_001.filtered.trimmed.paired.fastq.gzENCODE_DATA/set41_spikeins/fastq_trimmedfastqreadsknockdown followed by RNA-seqGraveley Lab1951HiSeq2500100paired-ended2ENCORE227441
    NT-BGHLV37-1D_Aligned.sortedByCoord.out.bamENCODE_DATA/set41_spikeins/STAR_ENCORE2_trimmed_file_linksbamalignmentsknockdown followed by RNA-seqGraveley Lab1951GRCh38V40NT-BGHLV37-1D_ACAGTG_HJMK5BCX2_L001_R1_001.filtered.trimmed.paired.fastq.gz,NT-BGHLV37-1D_ACAGTG_HJMK5BCX2_L001_R2_001.filtered.trimmed.paired.fastq.gzENCORE227469
    NT-BGHLV37-1D_Signal.Unique.strand+.bwENCODE_DATA/set41_spikeins/STAR_ENCORE2_trimmed_file_linksbigWig+uniqueplus strand signal of unique readsknockdown followed by RNA-seqGraveley Lab1951GRCh38V40NT-BGHLV37-1D/Aligned.sortedByCoord.out.bamENCORE227497
    NT-BGHLV37-1D_Signal.Unique.strand-.bwENCODE_DATA/set41_spikeins/STAR_ENCORE2_trimmed_file_linksbigWig-uniqueminus strand signal of unique readsknockdown followed by RNA-seqGraveley Lab1951GRCh38V40NT-BGHLV37-1D/Aligned.sortedByCoord.out.bamENCORE227525
    NT-BGHLV37-1D_Signal.UniqueMultiple.strand+.bwENCODE_DATA/set41_spikeins/STAR_ENCORE2_trimmed_file_linksbigWig+allplus strand signal of all readsknockdown followed by RNA-seqGraveley Lab1951GRCh38V40NT-BGHLV37-1D/Aligned.sortedByCoord.out.bamENCORE227553
    NT-BGHLV37-1D_Signal.UniqueMultiple.strand-.bwENCODE_DATA/set41_spikeins/STAR_ENCORE2_trimmed_file_linksbigWig-allminus strand signal of all readsknockdown followed by RNA-seqGraveley Lab1951GRCh38V40NT-BGHLV37-1D/Aligned.sortedByCoord.out.bamENCORE227581
    NT-BGHLV37-1D_quant.sfENCODE_DATA/set41_spikeins/salmon_ENCORE2transcript_quantificationtranscript quantificationsknockdown followed by RNA-seqGraveley Lab1951GRCh38V40NT-BGHLV37-1D_ACAGTG_HJMK5BCX2_L001_R1_001.filtered.trimmed.paired.fastq.gz,NT-BGHLV37-1D_ACAGTG_HJMK5BCX2_L001_R2_001.filtered.trimmed.paired.fastq.gzENCORE227609
    NT_BGHLV37-2_GTGAAA_L005_001.R1.fastq.gzENCODE_DATA/set37/fastqfastqreadsknockdown followed by RNA-seqGraveley Lab1632HiSeq2500100paired-ended1ENCODE322039
    NT_BGHLV37-2_GTGAAA_L005_001.R2.fastq.gzENCODE_DATA/set37/fastqfastqreadsknockdown followed by RNA-seqGraveley Lab1632HiSeq2500100paired-ended2ENCODE322055
    NT_BGHLV37-2_Aligned.sortedByCoord.out.bamENCODE_DATA/set37/STAR_ENCORE2_file_linksbamalignmentsknockdown followed by RNA-seqGraveley Lab1632GRCh38V40NT_BGHLV37-2_GTGAAA_L005_001.R1.fastq.gz,NT_BGHLV37-2_GTGAAA_L005_001.R2.fastq.gzENCORE222071
    NT_BGHLV37-2_Signal.Unique.strand+.bwENCODE_DATA/set37/STAR_ENCORE2_file_linksbigWig+uniqueplus strand signal of unique readsknockdown followed by RNA-seqGraveley Lab1632GRCh38V40NT_BGHLV37-2/Aligned.sortedByCoord.out.bamENCORE222087
    NT_BGHLV37-2_Signal.Unique.strand-.bwENCODE_DATA/set37/STAR_ENCORE2_file_linksbigWig-uniqueminus strand signal of unique readsknockdown followed by RNA-seqGraveley Lab1632GRCh38V40NT_BGHLV37-2/Aligned.sortedByCoord.out.bamENCORE222103
    NT_BGHLV37-2_Signal.UniqueMultiple.strand+.bwENCODE_DATA/set37/STAR_ENCORE2_file_linksbigWig+allplus strand signal of all readsknockdown followed by RNA-seqGraveley Lab1632GRCh38V40NT_BGHLV37-2/Aligned.sortedByCoord.out.bamENCORE222119
    NT_BGHLV37-2_Signal.UniqueMultiple.strand-.bwENCODE_DATA/set37/STAR_ENCORE2_file_linksbigWig-allminus strand signal of all readsknockdown followed by RNA-seqGraveley Lab1632GRCh38V40NT_BGHLV37-2/Aligned.sortedByCoord.out.bamENCORE222135
    NT_BGHLV37-2_quant.sfENCODE_DATA/set37/salmon_ENCORE2transcript_quantificationtranscript quantificationsknockdown followed by RNA-seqGraveley Lab1632GRCh38V40NT_BGHLV37-2_GTGAAA_L005_001.R1.fastq.gz,NT_BGHLV37-2_GTGAAA_L005_001.R2.fastq.gzENCORE222151
    NT-BGHLV37-2B_GCCAAT_ACBE67ANXX_L001_001.R1.fastq.gzENCODE_DATA/set39_H/fastqfastqreadsknockdown followed by RNA-seqGraveley Lab1688HiSeq2500100paired-ended1ENCODE322283
    NT-BGHLV37-2B_GCCAAT_ACBE67ANXX_L001_001.R2.fastq.gzENCODE_DATA/set39_H/fastqfastqreadsknockdown followed by RNA-seqGraveley Lab1688HiSeq2500100paired-ended2ENCODE322307
    NT-BGHLV37-2B_Aligned.sortedByCoord.out.bamENCODE_DATA/set39_H/STAR_ENCORE2_file_linksbamalignmentsknockdown followed by RNA-seqGraveley Lab1688GRCh38V40NT-BGHLV37-2B_GCCAAT_ACBE67ANXX_L001_001.R1.fastq.gz,NT-BGHLV37-2B_GCCAAT_ACBE67ANXX_L001_001.R2.fastq.gzENCORE222331
    NT-BGHLV37-2B_Signal.Unique.strand+.bwENCODE_DATA/set39_H/STAR_ENCORE2_file_linksbigWig+uniqueplus strand signal of unique readsknockdown followed by RNA-seqGraveley Lab1688GRCh38V40NT-BGHLV37-2B/Aligned.sortedByCoord.out.bamENCORE222355
    NT-BGHLV37-2B_Signal.Unique.strand-.bwENCODE_DATA/set39_H/STAR_ENCORE2_file_linksbigWig-uniqueminus strand signal of unique readsknockdown followed by RNA-seqGraveley Lab1688GRCh38V40NT-BGHLV37-2B/Aligned.sortedByCoord.out.bamENCORE222379
    NT-BGHLV37-2B_Signal.UniqueMultiple.strand+.bwENCODE_DATA/set39_H/STAR_ENCORE2_file_linksbigWig+allplus strand signal of all readsknockdown followed by RNA-seqGraveley Lab1688GRCh38V40NT-BGHLV37-2B/Aligned.sortedByCoord.out.bamENCORE222403
    NT-BGHLV37-2B_Signal.UniqueMultiple.strand-.bwENCODE_DATA/set39_H/STAR_ENCORE2_file_linksbigWig-allminus strand signal of all readsknockdown followed by RNA-seqGraveley Lab1688GRCh38V40NT-BGHLV37-2B/Aligned.sortedByCoord.out.bamENCORE222427
    NT-BGHLV37-2B_quant.sfENCODE_DATA/set39_H/salmon_ENCORE2transcript_quantificationtranscript quantificationsknockdown followed by RNA-seqGraveley Lab1688GRCh38V40NT-BGHLV37-2B_GCCAAT_ACBE67ANXX_L001_001.R1.fastq.gz,NT-BGHLV37-2B_GCCAAT_ACBE67ANXX_L001_001.R2.fastq.gzENCORE222451
    non-target-BGHLV37-2C_L001_001.R1.fastq.gzENCODE_DATA/set40_H/fastqfastqreadsknockdown followed by RNA-seqGraveley Lab342HiSeq2500100paired-ended1ENCODE423235
    non-target-BGHLV37-2C_L001_001.R2.fastq.gzENCODE_DATA/set40_H/fastqfastqreadsknockdown followed by RNA-seqGraveley Lab342HiSeq2500100paired-ended2ENCODE423243
    non-target-BGHLV37-2C_Aligned.sortedByCoord.out.bamENCODE_DATA/set40_H/STAR_ENCORE2_file_linksbamalignmentsknockdown followed by RNA-seqGraveley Lab342GRCh38V40non-target-BGHLV37-2C_L001_001.R1.fastq.gz,non-target-BGHLV37-2C_L001_001.R2.fastq.gzENCORE223261
    non-target-BGHLV37-2C_Signal.Unique.strand+.bwENCODE_DATA/set40_H/STAR_ENCORE2_file_linksbigWig+uniqueplus strand signal of unique readsknockdown followed by RNA-seqGraveley Lab342GRCh38V40non-target-BGHLV37-2C/Aligned.sortedByCoord.out.bamENCORE223295
    non-target-BGHLV37-2C_Signal.Unique.strand-.bwENCODE_DATA/set40_H/STAR_ENCORE2_file_linksbigWig-uniqueminus strand signal of unique readsknockdown followed by RNA-seqGraveley Lab342GRCh38V40non-target-BGHLV37-2C/Aligned.sortedByCoord.out.bamENCORE223329
    non-target-BGHLV37-2C_Signal.UniqueMultiple.strand+.bwENCODE_DATA/set40_H/STAR_ENCORE2_file_linksbigWig+allplus strand signal of all readsknockdown followed by RNA-seqGraveley Lab342GRCh38V40non-target-BGHLV37-2C/Aligned.sortedByCoord.out.bamENCORE223363
    non-target-BGHLV37-2C_Signal.UniqueMultiple.strand-.bwENCODE_DATA/set40_H/STAR_ENCORE2_file_linksbigWig-allminus strand signal of all readsknockdown followed by RNA-seqGraveley Lab342GRCh38V40non-target-BGHLV37-2C/Aligned.sortedByCoord.out.bamENCORE223397
    non-target-BGHLV37-2C_quant.sfENCODE_DATA/set40_H/salmon_ENCORE2transcript_quantificationtranscript quantificationsknockdown followed by RNA-seqGraveley Lab342GRCh38V40non-target-BGHLV37-2C_L001_001.R1.fastq.gz,non-target-BGHLV37-2C_L001_001.R2.fastq.gzENCORE223431
    NT-BGHLV37-2D_GCCAAT_HJMK5BCX2_L001_R1_001.filtered.trimmed.paired.fastq.gzENCODE_DATA/set41_spikeins/fastq_trimmedfastqreadsknockdown followed by RNA-seqGraveley Lab1952HiSeq2500100paired-ended1ENCORE227414
    NT-BGHLV37-2D_GCCAAT_HJMK5BCX2_L001_R2_001.filtered.trimmed.paired.fastq.gzENCODE_DATA/set41_spikeins/fastq_trimmedfastqreadsknockdown followed by RNA-seqGraveley Lab1952HiSeq2500100paired-ended2ENCORE227442
    NT-BGHLV37-2D_Aligned.sortedByCoord.out.bamENCODE_DATA/set41_spikeins/STAR_ENCORE2_trimmed_file_linksbamalignmentsknockdown followed by RNA-seqGraveley Lab1952GRCh38V40NT-BGHLV37-2D_GCCAAT_HJMK5BCX2_L001_R1_001.filtered.trimmed.paired.fastq.gz,NT-BGHLV37-2D_GCCAAT_HJMK5BCX2_L001_R2_001.filtered.trimmed.paired.fastq.gzENCORE227470
    NT-BGHLV37-2D_Signal.Unique.strand+.bwENCODE_DATA/set41_spikeins/STAR_ENCORE2_trimmed_file_linksbigWig+uniqueplus strand signal of unique readsknockdown followed by RNA-seqGraveley Lab1952GRCh38V40NT-BGHLV37-2D/Aligned.sortedByCoord.out.bamENCORE227498
    NT-BGHLV37-2D_Signal.Unique.strand-.bwENCODE_DATA/set41_spikeins/STAR_ENCORE2_trimmed_file_linksbigWig-uniqueminus strand signal of unique readsknockdown followed by RNA-seqGraveley Lab1952GRCh38V40NT-BGHLV37-2D/Aligned.sortedByCoord.out.bamENCORE227526
    NT-BGHLV37-2D_Signal.UniqueMultiple.strand+.bwENCODE_DATA/set41_spikeins/STAR_ENCORE2_trimmed_file_linksbigWig+allplus strand signal of all readsknockdown followed by RNA-seqGraveley Lab1952GRCh38V40NT-BGHLV37-2D/Aligned.sortedByCoord.out.bamENCORE227554
    NT-BGHLV37-2D_Signal.UniqueMultiple.strand-.bwENCODE_DATA/set41_spikeins/STAR_ENCORE2_trimmed_file_linksbigWig-allminus strand signal of all readsknockdown followed by RNA-seqGraveley Lab1952GRCh38V40NT-BGHLV37-2D/Aligned.sortedByCoord.out.bamENCORE227582
    NT-BGHLV37-2D_quant.sfENCODE_DATA/set41_spikeins/salmon_ENCORE2transcript_quantificationtranscript quantificationsknockdown followed by RNA-seqGraveley Lab1952GRCh38V40NT-BGHLV37-2D_GCCAAT_HJMK5BCX2_L001_R1_001.filtered.trimmed.paired.fastq.gz,NT-BGHLV37-2D_GCCAAT_HJMK5BCX2_L001_R2_001.filtered.trimmed.paired.fastq.gzENCORE227610