PRDM11

General Information

Gene Name : PRDM11
Gene ID : ENSG00000019485.13
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: PRDM11)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	PRDM11	ENSG00000019485.13	0.13	0.44	0.29	ENCSR000AEF
HepG2	PRDM11	ENSG00000019485.13	4.69	2.31	3.50	ENCSR985KAT
K562	PRDM11	ENSG00000019485.13	0.41	0.50	0.45	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for PRDM11 is not avaliable on ENCORE database.

Proteins bound to RNA

PRDM11 RNA is bound by 2 proteins.

CanvasJS.com

eCLIP assay for PRDM11 is not avaliable on ENCORE database.

2 proteins are bound to PRDM11 RNA:

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Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr11	45230919	45231012	+	intron-Distal,intron-Proximal	4.43215	4.59452	HepG2	PCBP2
chr11	45171061	45171142	+	intron-Distal	4.00698	3.16028	HepG2	SUGP2
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 2 of 2 entries

eCLIP assay for PRDM11 is not avaliable on ENCORE database.

Summary
DE Affected by

Diffrential Expression

The Knockdown/knockout assay for PRDM11 is not available on ENCORE database.
41 RBPs can affect the levels of PRDM11.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for PRDM11 is not available on ENCORE database.

41 RBPs can affect the gene expression of PRDM11 :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
PRDM11	ENSG00000019485.8	173.30300	25.53350	2.76270	18.37950	16.30890	K562	PCBP3
PRDM11	ENSG00000019485.8	100.57060	13.15960	2.93390	15.62050	14.18730	K562	DDX47
PRDM11	ENSG00000019485.8	75.37870	8.30300	3.18240	13.19540	11.13250	K562	HNRNPA1
PRDM11	ENSG00000019485.8	91.77620	10.41800	3.13890	11.87360	10.31060	K562	PRPF8
PRDM11	ENSG00000019485.8	90.74200	10.60820	3.09650	11.72160	10.01380	K562	RPS19
PRDM11	ENSG00000019485.8	141.02030	19.57990	2.84840	10.73290	9.20020	K562	POLR2G
PRDM11	ENSG00000019485.8	68.82070	11.15460	2.62510	7.71860	6.81950	K562	AQR
PRDM11	ENSG00000019485.8	119.37920	43.67650	1.45050	6.96680	6.11430	HepG2	PUM1
PRDM11	ENSG00000019485.8	102.89060	20.70990	2.31260	7.28120	6.04260	K562	GRSF1
PRDM11	ENSG00000019485.8	128.50290	41.15380	1.64260	6.34820	5.49450	HepG2	PUF60
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 45 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

PRDM11

General Information

Functions

Localization

Domains (AlphaFold: PRDM11)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for PRDM11 is not avaliable on ENCORE database.

2 proteins are bound to PRDM11 RNA:

eCLIP assay for PRDM11 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for PRDM11 is not available on ENCORE database.

41 RBPs can affect the gene expression of PRDM11 :

The Knockdown/knockout RNA-Seq assay for PRDM11 is not available on ENCORE database.

No RBPs affect the alternative splcing events of PRDM11 on ENCORE database.

The Knockdown/knockout RNA-Seq assay for PRDM11 is not avaliable on ENCORE database.