CTD-2134A5.4

General Information

Gene Name       : CTD-2134A5.4
Gene ID             :
Essential Gene : No

Functions

Localization

Domains (AlphaFold: CTD-2134A5.4)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for CTD-2134A5.4 is not avaliable on ENCORE database.



Proteins bound to RNA
  • CTD-2134A5.4 RNA is bound by 4 proteins.  







eCLIP assay for CTD-2134A5.4 is not avaliable on ENCORE database.





4 proteins are bound to CTD-2134A5.4 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr14104343659104343754-intron-Distal3.393843.27423HepG2AGGF1
chr14104341976104342003-intron-Distal4.648944.26705HepG2AGGF1
chr14104343086104343138-intron-Distal3.958127.92363HepG2ILF3
chr14104342404104342486-intron-Distal4.495618.25465HepG2AGGF1
chr14104341379104341450-intron-Distal3.322434.88448HepG2HNRNPL
chr14104341270104341322-intron-Distal4.009714.73828HepG2AGGF1
chr14104341485104341564-intron-Distal3.2943910.62648HepG2AGGF1
chr14104343262104343340-intron-Distal4.215414.18168HepG2ILF3
chr14104341377104341435-intron-Distal5.221298.14292HepG2AGGF1
chr14104342138104342175-intron-Distal3.677163.15341HepG2AGGF1
chr14104341643104341761-intron-Distal4.1438014.38984HepG2AGGF1
chr14104341465104341528-intron-Distal3.764104.51896HepG2XPO5
chr14104340076104340129-intron-Distal3.649113.18711HepG2ILF3
chr14104341147104341202-intron-Distal3.009714.22279HepG2AGGF1
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for CTD-2134A5.4 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for CTD-2134A5.4 is not available on ENCORE database.

  • 2 RBPs can affect the levels of CTD-2134A5.4.  








The Knockdown/knockout RNA-Seq assay for CTD-2134A5.4 is not available on ENCORE database.





2 RBPs can affect the gene expression of CTD-2134A5.4 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
CTD-2134A5.4ENSG00000258534.10.000008.37990-99999.999992.498701.91530HepG2PCBP1
CTD-2134A5.4ENSG00000258534.111.168800.885703.656401.973501.45860HepG2PUF60
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for CTD-2134A5.4 is not available on ENCORE database.






No RBPs affect the alternative splcing events of CTD-2134A5.4 on ENCORE database.





The Knockdown/knockout RNA-Seq assay for CTD-2134A5.4 is not avaliable on ENCORE database.