COL22A1

General Information

Gene Name       : COL22A1
Gene ID             : ENSG00000169436.16
Essential Gene : No

Functions

Localization

Domains (AlphaFold: COL22A1)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878COL22A1ENSG00000169436.160.000.000.00ENCSR000AEF
HepG2COL22A1ENSG00000169436.160.000.010.01ENCSR985KAT
K562COL22A1ENSG00000169436.160.000.000.00ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for COL22A1 is not avaliable on ENCORE database.



Proteins bound to RNA
  • COL22A1 RNA is bound by 5 proteins.  







eCLIP assay for COL22A1 is not avaliable on ENCORE database.





5 proteins are bound to COL22A1 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr8139716828139716880-intron-Distal4.030843.27946HepG2HNRNPM
chr8139716824139716879-intron-Distal4.164654.28571K562HNRNPM
chr8139815633139815692-intron-Distal3.2380213.80939K562NCBP2
chr8139815629139815691-intron-Distal4.2173628.47108K562XRCC6
chr8139815636139815694-intron-Distal3.012085.64030HepG2NOL12
chr8139815631139815691-intron-Distal3.786976.95142HepG2DDX3X
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for COL22A1 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for COL22A1 is not available on ENCORE database.

  • No RBPs affect the gene expression of COL22A1 on ENCORE database.


The Knockdown/knockout RNA-Seq assay for COL22A1 is not available on ENCORE database.






No RBPs affect the gene expression of COL22A1 on ENCORE database.






The Knockdown/knockout RNA-Seq assay for COL22A1 is not available on ENCORE database.






No RBPs affect the alternative splcing events of COL22A1 on ENCORE database.





The Knockdown/knockout RNA-Seq assay for COL22A1 is not avaliable on ENCORE database.