CCDC66

General Information

Gene Name : CCDC66
Gene ID : ENSG00000180376.16
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: CCDC66)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	CCDC66	ENSG00000180376.16	20.00	13.97	16.98	ENCSR000AEF
HepG2	CCDC66	ENSG00000180376.16	6.60	14.31	10.46	ENCSR985KAT
K562	CCDC66	ENSG00000180376.16	17.46	19.89	18.68	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for CCDC66 is not avaliable on ENCORE database.

Proteins bound to RNA

CCDC66 RNA is bound by 13 proteins.

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eCLIP assay for CCDC66 is not avaliable on ENCORE database.

13 proteins are bound to CCDC66 RNA:

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Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr3	56600764	56600861	+	3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal	6.97308	26.80084	K562	AQR
chr3	56600944	56601007	+	3'-UTR,5'-UTR,CDS,intron-Proximal	5.03741	17.14889	K562	AQR
chr3	56633019	56633092	+	intron-Distal	5.76810	13.65583	K562	EXOSC5
chr3	56644862	56644935	+	intron-Distal	5.25815	10.00762	K562	HNRNPM
chr3	56641421	56641495	+	intron-Distal	4.55357	8.51158	K562	EXOSC5
chr3	56612706	56612755	+	intron-Distal	5.22941	8.36716	K562	EXOSC5
chr3	56646572	56646646	+	intron-Distal	5.16073	8.03988	K562	EXOSC5
chr3	56637271	56637325	+	intron-Distal	5.01598	8.03988	K562	EXOSC5
chr3	56646879	56646962	+	intron-Distal	4.97410	7.90619	K562	HNRNPM
chr3	56643427	56643507	+	intron-Distal	5.19627	7.71312	K562	EXOSC5
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 59 entries

eCLIP assay for CCDC66 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for CCDC66 is not available on ENCORE database.
57 RBPs can affect the levels of CCDC66.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for CCDC66 is not available on ENCORE database.

57 RBPs can affect the gene expression of CCDC66 :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
CCDC66	ENSG00000180376.12	466.07140	166.76130	1.48270	21.44740	20.39400	HepG2	SRSF1
CCDC66	ENSG00000180376.12	548.16190	906.06080	-0.72500	8.37120	6.98340	K562	GPKOW
CCDC66	ENSG00000180376.12	284.24770	149.88650	0.92320	7.02090	6.19740	HepG2	TAF15
CCDC66	ENSG00000180376.12	318.94540	170.77950	0.90110	6.97950	6.18910	HepG2	NELFE
CCDC66	ENSG00000180376.12	344.40200	176.49190	0.96440	6.66510	5.65950	HepG2	MAGOH
CCDC66	ENSG00000180376.12	634.53410	949.03360	-0.58080	6.52290	5.31660	K562	CPSF6
CCDC66	ENSG00000180376.12	268.91250	153.45210	0.80920	5.45910	4.74550	HepG2	PTBP1
CCDC66	ENSG00000180376.12	295.11800	166.19770	0.82830	5.54930	4.71040	HepG2	QKI
CCDC66	ENSG00000180376.12	115.22910	212.59970	-0.88360	5.41140	4.45680	HepG2	DNAJC21
CCDC66	ENSG00000180376.12	277.10610	159.76790	0.79440	5.20200	4.43440	HepG2	SF3B4
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 61 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for CCDC66 is not available on ENCORE database.

17 RBPs can affect the splicing of CCDC66 :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	2ndExonStart	2ndExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
SE	CCDC66	ENSG00000180376.12	chr3	+	56599161	56599232			56597997	56598153	56600621	56600734	0.22200	0.00000	0.00016	included	K562	PUM1
SE	CCDC66	ENSG00000180376.12	chr3	+	56599161	56599232			56597997	56598153	56600621	56600734	0.20500	0.00000	0.00233	included	K562	PUM2
SE	CCDC66	ENSG00000180376.12	chr3	+	56599161	56599232			56597711	56598153	56600621	56600734	0.31900	0.00000	0.00000	included	K562	EIF4G2
MXE	CCDC66	ENSG00000180376.12	chr3	+	56599161	56599232	56600621	56600787	56597711	56598153	56600977	56601081	0.22200	0.00000	0.00000	1included	K562	EIF4G2
MXE	CCDC66	ENSG00000180376.12	chr3	+	56599161	56599232	56600621	56600768	56597711	56598153	56600977	56601081	0.27000	0.00000	0.00000	1included	K562	EIF4G2
SE	CCDC66	ENSG00000180376.12	chr3	+	56599161	56599232			56597711	56598153	56600621	56600734	0.35200	0.00001	0.00710	included	HepG2	NOL12
MXE	CCDC66	ENSG00000180376.12	chr3	+	56593596	56593622	56600621	56600768	56592873	56592938	56600977	56601081	-0.37800	0.00001	0.00083	2included	K562	SF3B1
SE	CCDC66	ENSG00000180376.12	chr3	+	56606364	56606456			56605208	56605330	56626997	56627129	0.55100	0.00002	0.00076	included	K562	SRSF1
A5SS	CCDC66	ENSG00000180376.12	chr3	+	56600621	56600787			56600621	56600768	56600977	56601081	-0.31900	0.00003	0.00381	shorter	K562	HNRNPC
MXE	CCDC66	ENSG00000180376.12	chr3	+	56605208	56605330	56626997	56627129	56600977	56601081	56627518	56627769	-0.56400	0.00006	0.04479	2included	K562	SLBP

Showing 1 to 10 of 27 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

CCDC66

General Information

Functions

Localization

Domains (AlphaFold: CCDC66)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for CCDC66 is not avaliable on ENCORE database.

13 proteins are bound to CCDC66 RNA:

eCLIP assay for CCDC66 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for CCDC66 is not available on ENCORE database.

57 RBPs can affect the gene expression of CCDC66 :

The Knockdown/knockout RNA-Seq assay for CCDC66 is not available on ENCORE database.

17 RBPs can affect the splicing of CCDC66 :

The Knockdown/knockout RNA-Seq assay for CCDC66 is not avaliable on ENCORE database.