ENCORE RBNS:XRCC6

XRCC6 RNA Bind-n-Seq

Experiment Information (Status: Released)


RBP	XRCC6
gene_aliases
Status	Released
Status_date	2020-11-23
Project	ENCODE4
Note
ID	15

Motif Logo

Sample Information

Sample_Name	Sample_Type	Read_size_range	rbns_protein_concentration	FILE_ID
XRCC6-20	RBNS	20-20	20	XRCC6_20.fastq.gz
XRCC6-320	RBNS	20-20	320	XRCC6_320.fastq.gz
XRCC6-80	RBNS	20-20	80	XRCC6_80.fastq.gz
XRCC6-input	CN	20-20	0	XRCC6_input.fastq.gz

Data Submission Information

ENCODE_alias	ENCODE_accession	object_type	assay_type	Sample_ID	SAMPLENAMEID	Selected	Status	Status_Date	Project	protocol_folder	protocol_file_name	ID
chris-burge:XRCC6	ENCSR189MAB	experiment	RNA Bind-n-Seq	XRCC6		Yes	Released	2020-11-23	ENCODE4			1912
chris-burge:lib-XRCC6-1	ENCLB687GER	library	RNA Bind-n-Seq	XRCC6		Yes	Released	2020-11-23	ENCODE4			1948
chris-burge:lib-XRCC6-2	ENCLB548YSE	library	RNA Bind-n-Seq	XRCC6		Yes	Released	2020-11-23	ENCODE4			1949
chris-burge:lib-XRCC6-3	ENCLB604VBK	library	RNA Bind-n-Seq	XRCC6		Yes	Released	2020-11-23	ENCODE4			1950
chris-burge:XRCC6_20.fastq.gz	ENCFF932TTA	file_fastq	RNA Bind-n-Seq	XRCC6		Yes	Released	2020-11-23	ENCODE4			1993
chris-burge:XRCC6_320.fastq.gz	ENCFF223OKF	file_fastq	RNA Bind-n-Seq	XRCC6		Yes	Released	2020-11-23	ENCODE4			1994
chris-burge:XRCC6_80.fastq.gz	ENCFF885DNO	file_fastq	RNA Bind-n-Seq	XRCC6		Yes	Released	2020-11-23	ENCODE4			1995
chris-burge:XRCC6_input.fastq.gz	ENCFF421XRC	file_fastq	RNA Bind-n-Seq	XRCC6		Yes	Released	2020-11-23	ENCODE4			1996
chris-burge:XRCC6_5mer_logo0.PWM	ENCFF216DXM	file_pwm	RNA Bind-n-Seq	XRCC6		Yes	Released	2020-11-23	ENCODE4			2028
chris-burge:XRCC6_5mer_logo1.PWM	ENCFF260DKM	file_pwm	RNA Bind-n-Seq	XRCC6		Yes	Released	2020-11-23	ENCODE4			2029
chris-burge:XRCC6_5mer_logo2.PWM	ENCFF476FRC	file_pwm	RNA Bind-n-Seq	XRCC6		Yes	Released	2020-11-23	ENCODE4			2030
chris-burge:XRCC6_6mer_logo0.PWM	ENCFF782LNG	file_pwm	RNA Bind-n-Seq	XRCC6		Yes	Released	2020-11-23	ENCODE4			2031
chris-burge:XRCC6_6mer_logo1.PWM	ENCFF071SHP	file_pwm	RNA Bind-n-Seq	XRCC6		Yes	Released	2020-11-23	ENCODE4			2032
chris-burge:XRCC6_6mer_logo2.PWM	ENCFF715YCE	file_pwm	RNA Bind-n-Seq	XRCC6		Yes	Released	2020-11-23	ENCODE4			2033
chris-burge:XRCC6_enrichment_R.4mers.mark_adapters.txt	ENCFF681UBK	file_enrichment	RNA Bind-n-Seq	XRCC6		Yes	Released	2020-11-23	ENCODE4			2068
chris-burge:XRCC6_enrichment_R.5mers.mark_adapters.txt	ENCFF825PGJ	file_enrichment	RNA Bind-n-Seq	XRCC6		Yes	Released	2020-11-23	ENCODE4			2069
chris-burge:XRCC6_enrichment_R.6mers.mark_adapters.txt	ENCFF584TIL	file_enrichment	RNA Bind-n-Seq	XRCC6		Yes	Released	2020-11-23	ENCODE4			2070

File Information

file_name	file_format	output_type	assay_type	lab	derived_from	controlled_by	Project	Note
XRCC6_20.fastq.gz	fastq	reads	RNA Bind-n-Seq	Burge Lab		EIF3D_input.fastq.gz	ENCODE4
XRCC6_320.fastq.gz	fastq	reads	RNA Bind-n-Seq	Burge Lab		EIF3D_input.fastq.gz	ENCODE4
XRCC6_80.fastq.gz	fastq	reads	RNA Bind-n-Seq	Burge Lab		EIF3D_input.fastq.gz	ENCODE4
XRCC6_input.fastq.gz	fastq	reads	RNA Bind-n-Seq	Burge Lab			ENCODE4
XRCC6_5mer_logo0.PWM	tsv	enrichment	RNA Bind-n-Seq	Burge Lab	XRCC6_20.fastq.gz,XRCC6_320.fastq.gz,XRCC6_80.fastq.gz,EIF3D_input.fastq.gz		ENCODE4
XRCC6_5mer_logo1.PWM	tsv	enrichment	RNA Bind-n-Seq	Burge Lab	XRCC6_20.fastq.gz,XRCC6_320.fastq.gz,XRCC6_80.fastq.gz,EIF3D_input.fastq.gz		ENCODE4
XRCC6_5mer_logo2.PWM	tsv	enrichment	RNA Bind-n-Seq	Burge Lab	XRCC6_20.fastq.gz,XRCC6_320.fastq.gz,XRCC6_80.fastq.gz,EIF3D_input.fastq.gz		ENCODE4
XRCC6_6mer_logo0.PWM	tsv	enrichment	RNA Bind-n-Seq	Burge Lab	XRCC6_20.fastq.gz,XRCC6_320.fastq.gz,XRCC6_80.fastq.gz,EIF3D_input.fastq.gz		ENCODE4
XRCC6_6mer_logo1.PWM	tsv	enrichment	RNA Bind-n-Seq	Burge Lab	XRCC6_20.fastq.gz,XRCC6_320.fastq.gz,XRCC6_80.fastq.gz,EIF3D_input.fastq.gz		ENCODE4
XRCC6_6mer_logo2.PWM	tsv	enrichment	RNA Bind-n-Seq	Burge Lab	XRCC6_20.fastq.gz,XRCC6_320.fastq.gz,XRCC6_80.fastq.gz,EIF3D_input.fastq.gz		ENCODE4
XRCC6_enrichment_R.4mers.mark_adapters.txt	tsv	enrichment	RNA Bind-n-Seq	Burge Lab	XRCC6_20.fastq.gz,XRCC6_320.fastq.gz,XRCC6_80.fastq.gz,EIF3D_input.fastq.gz		ENCODE4
XRCC6_enrichment_R.5mers.mark_adapters.txt	tsv	enrichment	RNA Bind-n-Seq	Burge Lab	XRCC6_20.fastq.gz,XRCC6_320.fastq.gz,XRCC6_80.fastq.gz,EIF3D_input.fastq.gz		ENCODE4
XRCC6_enrichment_R.6mers.mark_adapters.txt	tsv	enrichment	RNA Bind-n-Seq	Burge Lab	XRCC6_20.fastq.gz,XRCC6_320.fastq.gz,XRCC6_80.fastq.gz,EIF3D_input.fastq.gz		ENCODE4
XRCC6_5mer_seqlogos.png	png	document	RNA Bind-n-Seq	Burge Lab			ENCODE4
XRCC6_6mer_seqlogos.png	png	document	RNA Bind-n-Seq	Burge Lab			ENCODE4
XRCC6_coomassie.pdf	pdf	document	RNA Bind-n-Seq	Burge Lab			ENCODE4