Experiment Information (Status: Released)

RBP	TROVE2
gene_aliases
Status	Released
Status_date	2020-11-23
Project	ENCODE4
Note
ID	18

Motif Logo

Sample Information

Sample_Name	Sample_Type	Read_size_range	rbns_protein_concentration	FILE_ID
TROVE2-1300	RBNS	20-20	1300	TROVE2_repeat_1300.fastq.gz
TROVE2-5	RBNS	20-20	5	TROVE2_repeat_5.fastq.gz
TROVE2-80	RBNS	20-20	80	TROVE2_repeat_80.fastq.gz
TROVE2-input	CN	20-20	0	TROVE2_repeat_input.fastq.gz

Data Submission Information

ENCODE_alias	ENCODE_accession	object_type	assay_type	Sample_ID	SAMPLENAMEID	Selected	Status	Status_Date	Project	protocol_folder	protocol_file_name	ID
chris-burge:TROVE2	ENCSR653ZTY	experiment	RNA Bind-n-Seq	TROVE2		Yes	Released	2020-11-23	ENCODE4			1911
chris-burge:lib-TROVE2-1	ENCLB579JKY	library	RNA Bind-n-Seq	TROVE2		Yes	Released	2020-11-23	ENCODE4			1945
chris-burge:lib-TROVE2-2	ENCLB202RFZ	library	RNA Bind-n-Seq	TROVE2		Yes	Released	2020-11-23	ENCODE4			1946
chris-burge:lib-TROVE2-3	ENCLB117BWN	library	RNA Bind-n-Seq	TROVE2		Yes	Released	2020-11-23	ENCODE4			1947
chris-burge:TROVE2_repeat_1300.fastq.gz	ENCFF779BQS	file_fastq	RNA Bind-n-Seq	TROVE2		Yes	Released	2020-11-23	ENCODE4			1981
chris-burge:TROVE2_repeat_5.fastq.gz	ENCFF245ISP	file_fastq	RNA Bind-n-Seq	TROVE2		Yes	Released	2020-11-23	ENCODE4			1982
chris-burge:TROVE2_repeat_80.fastq.gz	ENCFF702NXM	file_fastq	RNA Bind-n-Seq	TROVE2		Yes	Released	2020-11-23	ENCODE4			1983
chris-burge:TROVE2_repeat_input.fastq.gz	ENCFF500YSZ	file_fastq	RNA Bind-n-Seq	TROVE2		Yes	Released	2020-11-23	ENCODE4			1984
chris-burge:TROVE2_5mer_logo0.PWM	ENCFF726HDC	file_pwm	RNA Bind-n-Seq	TROVE2		Yes	Released	2020-11-23	ENCODE4			2025
chris-burge:TROVE2_6mer_logo0.PWM	ENCFF791XTX	file_pwm	RNA Bind-n-Seq	TROVE2		Yes	Released	2020-11-23	ENCODE4			2026
chris-burge:TROVE2_6mer_logo1.PWM	ENCFF684NKR	file_pwm	RNA Bind-n-Seq	TROVE2		Yes	Released	2020-11-23	ENCODE4			2027
chris-burge:TROVE2_enrichment_R.4mers.mark_adapters.txt	ENCFF009LID	file_enrichment	RNA Bind-n-Seq	TROVE2		Yes	Released	2020-11-23	ENCODE4			2065
chris-burge:TROVE2_enrichment_R.5mers.mark_adapters.txt	ENCFF265BIN	file_enrichment	RNA Bind-n-Seq	TROVE2		Yes	Released	2020-11-23	ENCODE4			2066
chris-burge:TROVE2_enrichment_R.6mers.mark_adapters.txt	ENCFF073URD	file_enrichment	RNA Bind-n-Seq	TROVE2		Yes	Released	2020-11-23	ENCODE4			2067

File Information

file_name	file_format	output_type	assay_type	lab	derived_from	controlled_by	Project	Note
TROVE2_repeat_1300.fastq.gz	fastq	reads	RNA Bind-n-Seq	Burge Lab		SUCLG1_input.fastq.gz	ENCODE4
TROVE2_repeat_5.fastq.gz	fastq	reads	RNA Bind-n-Seq	Burge Lab		SUCLG1_input.fastq.gz	ENCODE4
TROVE2_repeat_80.fastq.gz	fastq	reads	RNA Bind-n-Seq	Burge Lab		SUCLG1_input.fastq.gz	ENCODE4
TROVE2_repeat_input.fastq.gz	fastq	reads	RNA Bind-n-Seq	Burge Lab			ENCODE4
TROVE2_5mer_logo0.PWM	tsv	enrichment	RNA Bind-n-Seq	Burge Lab	TROVE2_repeat_1300.fastq.gz,TROVE2_repeat_5.fastq.gz,TROVE2_repeat_80.fastq.gz,SUCLG1_input.fastq.gz		ENCODE4
TROVE2_6mer_logo0.PWM	tsv	enrichment	RNA Bind-n-Seq	Burge Lab	TROVE2_repeat_1300.fastq.gz,TROVE2_repeat_5.fastq.gz,TROVE2_repeat_80.fastq.gz,SUCLG1_input.fastq.gz		ENCODE4
TROVE2_6mer_logo1.PWM	tsv	enrichment	RNA Bind-n-Seq	Burge Lab	TROVE2_repeat_1300.fastq.gz,TROVE2_repeat_5.fastq.gz,TROVE2_repeat_80.fastq.gz,SUCLG1_input.fastq.gz		ENCODE4
TROVE2_enrichment_R.4mers.mark_adapters.txt	tsv	enrichment	RNA Bind-n-Seq	Burge Lab	TROVE2_repeat_1300.fastq.gz,TROVE2_repeat_5.fastq.gz,TROVE2_repeat_80.fastq.gz,SUCLG1_input.fastq.gz		ENCODE4
TROVE2_enrichment_R.5mers.mark_adapters.txt	tsv	enrichment	RNA Bind-n-Seq	Burge Lab	TROVE2_repeat_1300.fastq.gz,TROVE2_repeat_5.fastq.gz,TROVE2_repeat_80.fastq.gz,SUCLG1_input.fastq.gz		ENCODE4
TROVE2_enrichment_R.6mers.mark_adapters.txt	tsv	enrichment	RNA Bind-n-Seq	Burge Lab	TROVE2_repeat_1300.fastq.gz,TROVE2_repeat_5.fastq.gz,TROVE2_repeat_80.fastq.gz,SUCLG1_input.fastq.gz		ENCODE4
TROVE2_5mer_seqlogos.png	png	document	RNA Bind-n-Seq	Burge Lab			ENCODE4
TROVE2_6mer_seqlogos.png	png	document	RNA Bind-n-Seq	Burge Lab			ENCODE4
TROVE2_coomassie.pdf	pdf	document	RNA Bind-n-Seq	Burge Lab			ENCODE4