ENCORE RBNS:TRNAU1AP

TRNAU1AP RNA Bind-n-Seq

Experiment Information (Status: Released)


RBP	TRNAU1AP
gene_aliases
Status	Released
Status_date	2022-07-15
Project	ENCODE3
Note
ID	74

Motif Logo

Sample Information

Sample_Name	Sample_Type	Read_size_range	rbns_protein_concentration	FILE_ID
TRNAU1AP-1300	RBNS	20-20	1300	SECP43_1300.fastq.gz
TRNAU1AP-20	RBNS	20-20	20	SECP43_20.fastq.gz
TRNAU1AP-320	RBNS	20-20	320	SECP43_320.fastq.gz
TRNAU1AP-5	RBNS	20-20	5	SECP43_5.fastq.gz
TRNAU1AP-80	RBNS	20-20	80	SECP43_80.fastq.gz
TRNAU1AP-input	CN	20-20	0	SECP43_input.fastq.gz

Data Submission Information

ENCODE_alias	ENCODE_accession	object_type	assay_type	Sample_ID	SAMPLENAMEID	Selected	Status	Status_Date	Project	protocol_folder	protocol_file_name	ID
chris-burge:SECP43	ENCSR419XDN	experiment	RNA Bind-n-Seq	TRNAU1AP		Yes	Released	2022-07-12	ENCODE3			8140
chris-burge:lib-SECP43-1	ENCLB630NLA	library	RNA Bind-n-Seq	TRNAU1AP		Yes	Released	2022-07-12	ENCODE3			8515
chris-burge:lib-SECP43-2	ENCLB194GDN	library	RNA Bind-n-Seq	TRNAU1AP		Yes	Released	2022-07-12	ENCODE3			8516
chris-burge:lib-SECP43-3	ENCLB442HKY	library	RNA Bind-n-Seq	TRNAU1AP		Yes	Released	2022-07-12	ENCODE3			8517
chris-burge:lib-SECP43-4	ENCLB995LBM	library	RNA Bind-n-Seq	TRNAU1AP		Yes	Released	2022-07-12	ENCODE3			8518
chris-burge:lib-SECP43-5	ENCLB820LFR	library	RNA Bind-n-Seq	TRNAU1AP		Yes	Released	2022-07-12	ENCODE3			8519
chris-burge:SECP43_1300.fastq.gz	ENCFF339GLP	file_fastq	RNA Bind-n-Seq	TRNAU1AP		Yes	Released	2022-07-14	ENCODE3			8916
chris-burge:SECP43_20.fastq.gz	ENCFF369WZD	file_fastq	RNA Bind-n-Seq	TRNAU1AP		Yes	Released	2022-07-14	ENCODE3			8917
chris-burge:SECP43_320.fastq.gz	ENCFF330UOX	file_fastq	RNA Bind-n-Seq	TRNAU1AP		Yes	Released	2022-07-14	ENCODE3			8918
chris-burge:SECP43_5.fastq.gz	ENCFF823RGZ	file_fastq	RNA Bind-n-Seq	TRNAU1AP		Yes	Released	2022-07-14	ENCODE3			8919
chris-burge:SECP43_80.fastq.gz	ENCFF228IGY	file_fastq	RNA Bind-n-Seq	TRNAU1AP		Yes	Released	2022-07-14	ENCODE3			8920
chris-burge:SECP43_enrichment_R.4mers.txt	ENCFF848YLS	file_enrichment	RNA Bind-n-Seq	TRNAU1AP		Yes	Released	2022-07-14	ENCODE3			9429
chris-burge:SECP43_enrichment_R.5mers.txt	ENCFF315DBD	file_enrichment	RNA Bind-n-Seq	TRNAU1AP		Yes	Released	2022-07-14	ENCODE3			9430
chris-burge:SECP43_enrichment_R.6mers.txt	ENCFF174NLG	file_enrichment	RNA Bind-n-Seq	TRNAU1AP		Yes	Released	2022-07-14	ENCODE3			9431
chris-burge:SECP43_enrichment_R.7mers.txt	ENCFF232FXD	file_enrichment	RNA Bind-n-Seq	TRNAU1AP		Yes	Released	2022-07-14	ENCODE3			9432
chris-burge:SECP43_est_binding_frac.4mers.ordered_by_enrichment.txt	ENCFF361MIR	file_library-fraction	RNA Bind-n-Seq	TRNAU1AP		Yes	Released	2022-07-14	ENCODE3			9433
chris-burge:SECP43_est_binding_frac.5mers.ordered_by_enrichment.txt	ENCFF850VYB	file_library-fraction	RNA Bind-n-Seq	TRNAU1AP		Yes	Released	2022-07-14	ENCODE3			9434
chris-burge:SECP43_est_binding_frac.6mers.ordered_by_enrichment.txt	ENCFF858OFZ	file_library-fraction	RNA Bind-n-Seq	TRNAU1AP		Yes	Released	2022-07-14	ENCODE3			9435
chris-burge:SECP43_est_binding_frac.7mers.ordered_by_enrichment.txt	ENCFF077FYY	file_library-fraction	RNA Bind-n-Seq	TRNAU1AP		Yes	Released	2022-07-14	ENCODE3			9436

File Information

file_name	file_format	output_type	assay_type	lab	derived_from	controlled_by	Project	Note
TRNAU1AP.logo.png	png	document	RNA Bind-n-Seq	Burge Lab			ENCODE3
SECP43_1300.fastq.gz	fastq	reads	RNA Bind-n-Seq	Burge Lab		PCBP1_input.fastq.gz	ENCODE3
SECP43_20.fastq.gz	fastq	reads	RNA Bind-n-Seq	Burge Lab		PCBP1_input.fastq.gz	ENCODE3
SECP43_320.fastq.gz	fastq	reads	RNA Bind-n-Seq	Burge Lab		PCBP1_input.fastq.gz	ENCODE3
SECP43_5.fastq.gz	fastq	reads	RNA Bind-n-Seq	Burge Lab		PCBP1_input.fastq.gz	ENCODE3
SECP43_80.fastq.gz	fastq	reads	RNA Bind-n-Seq	Burge Lab		PCBP1_input.fastq.gz	ENCODE3
SECP43_input.fastq.gz	fastq	reads	RNA Bind-n-Seq	Burge Lab			ENCODE3
SECP43_enrichment_R.4mers.txt	tsv	enrichment	RNA Bind-n-Seq	Burge Lab	SECP43_1300.fastq.gz,SECP43_20.fastq.gz,SECP43_320.fastq.gz,SECP43_5.fastq.gz,SECP43_80.fastq.gz,PCBP1_input.fastq.gz		ENCODE3
SECP43_est_binding_frac.4mers.ordered_by_enrichment.txt	tsv	enrichment	RNA Bind-n-Seq	Burge Lab	SECP43_1300.fastq.gz,SECP43_20.fastq.gz,SECP43_320.fastq.gz,SECP43_5.fastq.gz,SECP43_80.fastq.gz,PCBP1_input.fastq.gz		ENCODE3
SECP43_enrichment_R.5mers.txt	tsv	enrichment	RNA Bind-n-Seq	Burge Lab	SECP43_1300.fastq.gz,SECP43_20.fastq.gz,SECP43_320.fastq.gz,SECP43_5.fastq.gz,SECP43_80.fastq.gz,PCBP1_input.fastq.gz		ENCODE3
SECP43_est_binding_frac.5mers.ordered_by_enrichment.txt	tsv	enrichment	RNA Bind-n-Seq	Burge Lab	SECP43_1300.fastq.gz,SECP43_20.fastq.gz,SECP43_320.fastq.gz,SECP43_5.fastq.gz,SECP43_80.fastq.gz,PCBP1_input.fastq.gz		ENCODE3
SECP43_enrichment_R.6mers.txt	tsv	enrichment	RNA Bind-n-Seq	Burge Lab	SECP43_1300.fastq.gz,SECP43_20.fastq.gz,SECP43_320.fastq.gz,SECP43_5.fastq.gz,SECP43_80.fastq.gz,PCBP1_input.fastq.gz		ENCODE3
SECP43_est_binding_frac.6mers.ordered_by_enrichment.txt	tsv	enrichment	RNA Bind-n-Seq	Burge Lab	SECP43_1300.fastq.gz,SECP43_20.fastq.gz,SECP43_320.fastq.gz,SECP43_5.fastq.gz,SECP43_80.fastq.gz,PCBP1_input.fastq.gz		ENCODE3
SECP43_enrichment_R.7mers.txt	tsv	enrichment	RNA Bind-n-Seq	Burge Lab	SECP43_1300.fastq.gz,SECP43_20.fastq.gz,SECP43_320.fastq.gz,SECP43_5.fastq.gz,SECP43_80.fastq.gz,PCBP1_input.fastq.gz		ENCODE3
SECP43_est_binding_frac.7mers.ordered_by_enrichment.txt	tsv	enrichment	RNA Bind-n-Seq	Burge Lab	SECP43_1300.fastq.gz,SECP43_20.fastq.gz,SECP43_320.fastq.gz,SECP43_5.fastq.gz,SECP43_80.fastq.gz,PCBP1_input.fastq.gz		ENCODE3