Experiment Information (Status: Released)

RBP	TRA2B
gene_aliases
Status	Released
Status_date	2020-12-07
Project	ENCODE4
Note
ID	9

Motif Logo

Sample Information

Sample_Name	Sample_Type	Read_size_range	rbns_protein_concentration	FILE_ID
TRA2B-1300	RBNS	20-20	1300	TRA2B_0nM_1300.fastq.gz
TRA2B-5	RBNS	20-20	5	TRA2B_0nM_5.fastq.gz
TRA2B-80	RBNS	20-20	80	TRA2B_0nM_80.fastq.gz
TRA2B-input	CN	20-20	0	TRA2B_0nM_input.fastq.gz

Data Submission Information

ENCODE_alias	ENCODE_accession	object_type	assay_type	Sample_ID	SAMPLENAMEID	Selected	Status	Status_Date	Project	protocol_folder	protocol_file_name	ID
chris-burge:TRA2B-input-cntl	ENCSR373NTB	experiment	RNA Bind-n-Seq	TRA2B	SRPK2-BGHcLV12-70	Yes	Released	2020-11-23	ENCODE4			1724
chris-burge:TRA2B	ENCSR391FEW	experiment	RNA Bind-n-Seq	TRA2B	PPP1R8-BGHcLV12-63	Yes	Released	2020-11-23	ENCODE4			1725
chris-burge:lib-TRA2B-1300	ENCLB482AQQ	library	RNA Bind-n-Seq	TRA2B	PPP1R8-BGHcLV12-63	Yes	Released	2020-11-23	ENCODE4			1759
chris-burge:lib-TRA2B-5	ENCLB341VWP	library	RNA Bind-n-Seq	TRA2B	PPP1R8-BGHcLV12-64	Yes	Released	2020-11-23	ENCODE4			1760
chris-burge:lib-TRA2B-80	ENCLB301RVS	library	RNA Bind-n-Seq	TRA2B	SRPK2-BGHcLV12-69	Yes	Released	2020-11-23	ENCODE4			1761
chris-burge:lib-TRA2B-input	ENCLB178UHX	library	RNA Bind-n-Seq	TRA2B	SRPK2-BGHcLV12-70	Yes	Released	2020-11-23	ENCODE4			1762
chris-burge:TRA2B_0nM_input.fastq.gz	ENCFF601ZQE	file_fastq	RNA Bind-n-Seq	TRA2B	SRPK2-BGHcLV12-70	Yes	Released	2020-11-23	ENCODE4			1781
chris-burge:TRA2B_0nM_1300.fastq.gz	ENCFF777VGS	file_fastq	RNA Bind-n-Seq	TRA2B	PPP1R8-BGHcLV12-63	Yes	Released	2020-11-23	ENCODE4			1807
chris-burge:TRA2B_0nM_5.fastq.gz	ENCFF053XRQ	file_fastq	RNA Bind-n-Seq	TRA2B	PPP1R8-BGHcLV12-64	Yes	Released	2020-11-23	ENCODE4			1808
chris-burge:TRA2B_0nM_80.fastq.gz	ENCFF306CPI	file_fastq	RNA Bind-n-Seq	TRA2B	SRPK2-BGHcLV12-69	Yes	Released	2020-11-23	ENCODE4			1809
chris-burge:TRA2B_0nM_6mer_logo0.PWM.txt	ENCFF762NVQ	file_pwm	RNA Bind-n-Seq	TRA2B	PPP1R8-BGHcLV12-63	Yes	Released	2020-11-23	ENCODE4			1869
chris-burge:TRA2B_0nM_6mer_logo1.PWM.txt	ENCFF763MIF	file_pwm	RNA Bind-n-Seq	TRA2B	PPP1R8-BGHcLV12-63	Yes	Released	2020-11-23	ENCODE4			1870
chris-burge:TRA2B_0nM_enrichment_R.4mers.txt	ENCFF087FIC	file_enrichment	RNA Bind-n-Seq	TRA2B	PPP1R8-BGHcLV12-63	Yes	Released	2020-11-23	ENCODE4			1871
chris-burge:TRA2B_0nM_enrichment_R.5mers.txt	ENCFF083WIC	file_enrichment	RNA Bind-n-Seq	TRA2B	PPP1R8-BGHcLV12-63	Yes	Released	2020-11-23	ENCODE4			1872
chris-burge:TRA2B_0nM_enrichment_R.6mers.txt	ENCFF804ETQ	file_enrichment	RNA Bind-n-Seq	TRA2B	PPP1R8-BGHcLV12-63	Yes	Released	2020-11-23	ENCODE4			1873

File Information

file_name	file_format	output_type	assay_type	lab	derived_from	controlled_by	Project	Note
TRA2B_0nM_1300.fastq.gz	fastq	reads	RNA Bind-n-Seq	Burge Lab		TRA2B_0nM_input.fastq.gz	ENCODE3
TRA2B_0nM_5.fastq.gz	fastq	reads	RNA Bind-n-Seq	Burge Lab		TRA2B_0nM_input.fastq.gz	ENCODE3
TRA2B_0nM_80.fastq.gz	fastq	reads	RNA Bind-n-Seq	Burge Lab		TRA2B_0nM_input.fastq.gz	ENCODE3
TRA2B_0nM_input.fastq.gz	fastq	reads	RNA Bind-n-Seq	Burge Lab			ENCODE3
TRA2B_0nM_6mer_logo0.PWM.txt	tsv	enrichment	RNA Bind-n-Seq	Burge Lab	TRA2B_0nM_1300.fastq.gz,TRA2B_0nM_5.fastq.gz,TRA2B_0nM_80.fastq.gz,TRA2B_0nM_input.fastq.gz		ENCODE4
TRA2B_0nM_6mer_logo1.PWM.txt	tsv	enrichment	RNA Bind-n-Seq	Burge Lab	TRA2B_0nM_1300.fastq.gz,TRA2B_0nM_5.fastq.gz,TRA2B_0nM_80.fastq.gz,TRA2B_0nM_input.fastq.gz		ENCODE4
TRA2B_0nM_enrichment_R.4mers.txt	tsv	enrichment	RNA Bind-n-Seq	Burge Lab	TRA2B_0nM_1300.fastq.gz,TRA2B_0nM_5.fastq.gz,TRA2B_0nM_80.fastq.gz,TRA2B_0nM_input.fastq.gz		ENCODE4
TRA2B_0nM_enrichment_R.5mers.txt	tsv	enrichment	RNA Bind-n-Seq	Burge Lab	TRA2B_0nM_1300.fastq.gz,TRA2B_0nM_5.fastq.gz,TRA2B_0nM_80.fastq.gz,TRA2B_0nM_input.fastq.gz		ENCODE4
TRA2B_0nM_enrichment_R.6mers.txt	tsv	enrichment	RNA Bind-n-Seq	Burge Lab	TRA2B_0nM_1300.fastq.gz,TRA2B_0nM_5.fastq.gz,TRA2B_0nM_80.fastq.gz,TRA2B_0nM_input.fastq.gz		ENCODE4
TRA2B_0nM_6mer_seqlogos.png	png	document	RNA Bind-n-Seq	Burge Lab			ENCODE4
TRA2B.png	png	document	RNA Bind-n-Seq	Burge Lab			ENCODE4