Experiment Information (Status: Released)

RBP	TRA2A
gene_aliases
Status	Released
Status_date	2022-07-15
Project	ENCODE3
Note
ID	55

Motif Logo

Sample Information

Sample_Name	Sample_Type	Read_size_range	rbns_protein_concentration	FILE_ID
TRA2A-mockPD	CN	20-20	0	TRA2A_0.fastq.gz
TRA2A-1300	RBNS	20-20	1300	TRA2A_1300.fastq.gz
TRA2A-20	RBNS	20-20	20	TRA2A_20.fastq.gz
TRA2A-320	RBNS	20-20	320	TRA2A_320.fastq.gz
TRA2A-5	RBNS	20-20	5	TRA2A_5.fastq.gz
TRA2A-80	RBNS	20-20	80	TRA2A_80.fastq.gz
TRA2A-input	CN	20-20	0	TRA2A_input.fastq.gz

Data Submission Information

ENCODE_alias	ENCODE_accession	object_type	assay_type	Sample_ID	SAMPLENAMEID	Selected	Status	Status_Date	Project	protocol_folder	protocol_file_name	ID
chris-burge:TRA2A	ENCSR741VUK	experiment	RNA Bind-n-Seq	TRA2A	RPL11-BGHcLV16-48	Yes	Released	2022-07-12	ENCODE3			8137
chris-burge:TRA2A-input-cntl	ENCSR883DFK	experiment	RNA Bind-n-Seq	TRA2A	XRCC6-BGHcLV16-59	Yes	Released	2022-07-12	ENCODE3			8138
chris-burge:TRA2A-mockPD-cntl	ENCSR118LLV	experiment	RNA Bind-n-Seq	TRA2A	RPL11-BGHcLV16-47	Yes	Released	2022-07-12	ENCODE3			8139
chris-burge:lib-TRA2A-1	ENCLB396VXU	library	RNA Bind-n-Seq	TRA2A	THOC1-BGHcLV16-57	Yes	Released	2022-07-12	ENCODE3			8599
chris-burge:lib-TRA2A-2	ENCLB742YIT	library	RNA Bind-n-Seq	TRA2A	SMAD2-BGHcLV16-51	Yes	Released	2022-07-12	ENCODE3			8600
chris-burge:lib-TRA2A-3	ENCLB187UUC	library	RNA Bind-n-Seq	TRA2A	THOC1-BGHcLV16-58	Yes	Released	2022-07-12	ENCODE3			8601
chris-burge:lib-TRA2A-4	ENCLB842LVC	library	RNA Bind-n-Seq	TRA2A	SMAD2-BGHcLV16-52	Yes	Released	2022-07-12	ENCODE3			8602
chris-burge:lib-TRA2A-5	ENCLB683AIE	library	RNA Bind-n-Seq	TRA2A	RPL11-BGHcLV16-48	Yes	Released	2022-07-12	ENCODE3			8603
chris-burge:lib-TRA2A-input-cntl	ENCLB455ESZ	library	RNA Bind-n-Seq	TRA2A	XRCC6-BGHcLV16-59	Yes	Released	2022-07-12	ENCODE3			8604
chris-burge:lib-TRA2A-mockPD-cntl	ENCLB226ILU	library	RNA Bind-n-Seq	TRA2A	RPL11-BGHcLV16-47	Yes	Released	2022-07-12	ENCODE3			8605
chris-burge:TRA2A_enrichment_R.4mers.txt	ENCFF879MFV	file_enrichment	RNA Bind-n-Seq	TRA2A	RPL11-BGHcLV16-48	Yes	Released	2022-07-14	ENCODE3			9531
chris-burge:TRA2A_enrichment_R.5mers.txt	ENCFF191NLM	file_enrichment	RNA Bind-n-Seq	TRA2A	RPL11-BGHcLV16-48	Yes	Released	2022-07-14	ENCODE3			9532
chris-burge:TRA2A_enrichment_R.6mers.txt	ENCFF351RRP	file_enrichment	RNA Bind-n-Seq	TRA2A	RPL11-BGHcLV16-48	Yes	Released	2022-07-14	ENCODE3			9533
chris-burge:TRA2A_enrichment_R.7mers.txt	ENCFF971NRM	file_enrichment	RNA Bind-n-Seq	TRA2A	RPL11-BGHcLV16-48	Yes	Released	2022-07-14	ENCODE3			9534
chris-burge:TRA2A_est_binding_frac.4mers.txt	ENCFF191XFI	file_library-fraction	RNA Bind-n-Seq	TRA2A	RPL11-BGHcLV16-48	Yes	Released	2022-07-14	ENCODE3			9535
chris-burge:TRA2A_est_binding_frac.5mers.txt	ENCFF115SBU	file_library-fraction	RNA Bind-n-Seq	TRA2A	RPL11-BGHcLV16-48	Yes	Released	2022-07-14	ENCODE3			9536
chris-burge:TRA2A_est_binding_frac.6mers.txt	ENCFF804SZR	file_library-fraction	RNA Bind-n-Seq	TRA2A	RPL11-BGHcLV16-48	Yes	Released	2022-07-14	ENCODE3			9537
chris-burge:TRA2A_est_binding_frac.7mers.txt	ENCFF517XHH	file_library-fraction	RNA Bind-n-Seq	TRA2A	RPL11-BGHcLV16-48	Yes	Released	2022-07-14	ENCODE3			9538
chris-burge:TRA2A_0.fastq.gz	ENCFF499TRO	file_fastq	RNA Bind-n-Seq	TRA2A	RPL11-BGHcLV16-47	Yes	Released	2022-07-14	ENCODE3			9707
chris-burge:TRA2A_1300.fastq.gz	ENCFF406VDD	file_fastq	RNA Bind-n-Seq	TRA2A	RPL11-BGHcLV16-48	Yes	Released	2022-07-14	ENCODE3			9708
chris-burge:TRA2A_20.fastq.gz	ENCFF674LSW	file_fastq	RNA Bind-n-Seq	TRA2A	SMAD2-BGHcLV16-51	Yes	Released	2022-07-14	ENCODE3			9709
chris-burge:TRA2A_320.fastq.gz	ENCFF053JOA	file_fastq	RNA Bind-n-Seq	TRA2A	SMAD2-BGHcLV16-52	Yes	Released	2022-07-14	ENCODE3			9710
chris-burge:TRA2A_5.fastq.gz	ENCFF209PWZ	file_fastq	RNA Bind-n-Seq	TRA2A	THOC1-BGHcLV16-57	Yes	Released	2022-07-14	ENCODE3			9711
chris-burge:TRA2A_80.fastq.gz	ENCFF369HLN	file_fastq	RNA Bind-n-Seq	TRA2A	THOC1-BGHcLV16-58	Yes	Released	2022-07-14	ENCODE3			9712
chris-burge:TRA2A_input.fastq.gz	ENCFF979UHU	file_fastq	RNA Bind-n-Seq	TRA2A	XRCC6-BGHcLV16-59	Yes	Released	2022-07-14	ENCODE3			9713
chris-burge:HepG2.with_motif.TRA2A.bed.gz	ENCFF015CJR	file_bed	RNA Bind-n-Seq	TRA2A	RPL11-BGHcLV16-48	Yes	Released	2022-07-14	ENCODE3			9753
chris-burge:K562.with_motif.TRA2A.bed.gz	ENCFF425CRZ	file_bed	RNA Bind-n-Seq	TRA2A	RPL11-BGHcLV16-48	Yes	Released	2022-07-14	ENCODE3			9754

File Information

file_name	file_format	output_type	assay_type	lab	derived_from	controlled_by	Project	Note
TRA2A.logo.png	png	document	RNA Bind-n-Seq	Burge Lab			ENCODE3
TRA2A_0.fastq.gz	fastq	reads	RNA Bind-n-Seq	Burge Lab			ENCODE3
TRA2A_1300.fastq.gz	fastq	reads	RNA Bind-n-Seq	Burge Lab		TRA2A_0.fastq.gz,TRA2A_input.fastq.gz	ENCODE3
TRA2A_20.fastq.gz	fastq	reads	RNA Bind-n-Seq	Burge Lab		TRA2A_0.fastq.gz,TRA2A_input.fastq.gz	ENCODE3
TRA2A_320.fastq.gz	fastq	reads	RNA Bind-n-Seq	Burge Lab		TRA2A_0.fastq.gz,TRA2A_input.fastq.gz	ENCODE3
TRA2A_5.fastq.gz	fastq	reads	RNA Bind-n-Seq	Burge Lab		TRA2A_0.fastq.gz,TRA2A_input.fastq.gz	ENCODE3
TRA2A_80.fastq.gz	fastq	reads	RNA Bind-n-Seq	Burge Lab		TRA2A_0.fastq.gz,TRA2A_input.fastq.gz	ENCODE3
TRA2A_input.fastq.gz	fastq	reads	RNA Bind-n-Seq	Burge Lab			ENCODE3
TRA2A_enrichment_R.4mers.txt	tsv	enrichment	RNA Bind-n-Seq	Burge Lab	TRA2A_0.fastq.gz,TRA2A_1300.fastq.gz,TRA2A_20.fastq.gz,TRA2A_320.fastq.gz,TRA2A_5.fastq.gz,TRA2A_80.fastq.gz,TRA2A_input.fastq.gz		ENCODE3
TRA2A_est_binding_frac.4mers.txt	tsv	enrichment	RNA Bind-n-Seq	Burge Lab	TRA2A_0.fastq.gz,TRA2A_1300.fastq.gz,TRA2A_20.fastq.gz,TRA2A_320.fastq.gz,TRA2A_5.fastq.gz,TRA2A_80.fastq.gz,TRA2A_input.fastq.gz		ENCODE3
TRA2A_enrichment_R.5mers.txt	tsv	enrichment	RNA Bind-n-Seq	Burge Lab	TRA2A_0.fastq.gz,TRA2A_1300.fastq.gz,TRA2A_20.fastq.gz,TRA2A_320.fastq.gz,TRA2A_5.fastq.gz,TRA2A_80.fastq.gz,TRA2A_input.fastq.gz		ENCODE3
TRA2A_est_binding_frac.5mers.txt	tsv	enrichment	RNA Bind-n-Seq	Burge Lab	TRA2A_0.fastq.gz,TRA2A_1300.fastq.gz,TRA2A_20.fastq.gz,TRA2A_320.fastq.gz,TRA2A_5.fastq.gz,TRA2A_80.fastq.gz,TRA2A_input.fastq.gz		ENCODE3
TRA2A_enrichment_R.6mers.txt	tsv	enrichment	RNA Bind-n-Seq	Burge Lab	TRA2A_0.fastq.gz,TRA2A_1300.fastq.gz,TRA2A_20.fastq.gz,TRA2A_320.fastq.gz,TRA2A_5.fastq.gz,TRA2A_80.fastq.gz,TRA2A_input.fastq.gz		ENCODE3
TRA2A_est_binding_frac.6mers.txt	tsv	enrichment	RNA Bind-n-Seq	Burge Lab	TRA2A_0.fastq.gz,TRA2A_1300.fastq.gz,TRA2A_20.fastq.gz,TRA2A_320.fastq.gz,TRA2A_5.fastq.gz,TRA2A_80.fastq.gz,TRA2A_input.fastq.gz		ENCODE3
TRA2A_enrichment_R.7mers.txt	tsv	enrichment	RNA Bind-n-Seq	Burge Lab	TRA2A_0.fastq.gz,TRA2A_1300.fastq.gz,TRA2A_20.fastq.gz,TRA2A_320.fastq.gz,TRA2A_5.fastq.gz,TRA2A_80.fastq.gz,TRA2A_input.fastq.gz		ENCODE3
TRA2A_est_binding_frac.7mers.txt	tsv	enrichment	RNA Bind-n-Seq	Burge Lab	TRA2A_0.fastq.gz,TRA2A_1300.fastq.gz,TRA2A_20.fastq.gz,TRA2A_320.fastq.gz,TRA2A_5.fastq.gz,TRA2A_80.fastq.gz,TRA2A_input.fastq.gz		ENCODE3
K562.with_motif.TRA2A.bed.gz	bed_RBNS	peaks	RNA Bind-n-Seq	Burge Lab	TRA2A_enrichment_R.5mers.txt,240.01v02.IDR.out.0102merged.bed.blacklist_removed.bed.narrowPeak.encode.bed.gz		ENCODE3
HepG2.with_motif.TRA2A.bed.gz	bed_RBNS	peaks	RNA Bind-n-Seq	Burge Lab	TRA2A_enrichment_R.5mers.txt,218.01v02.IDR.out.0102merged.bed.blacklist_removed.bed.narrowPeak.encode.bed.gz		ENCODE3