Experiment Information (Status: Released)

RBP	TIA1
gene_aliases
Status	Released
Status_date	2022-07-15
Project	ENCODE3
Note
ID	41

Motif Logo

Sample Information

Sample_Name	Sample_Type	Read_size_range	rbns_protein_concentration	FILE_ID
TIA1-1300	RBNS	20-20	1300	TIA1_1300.fastq.gz
TIA1-20	RBNS	20-20	20	TIA1_20.fastq.gz
TIA1-320	RBNS	20-20	320	TIA1_320.fastq.gz
TIA1-5	RBNS	20-20	5	TIA1_5.fastq.gz
TIA1-80	RBNS	20-20	80	TIA1_80.fastq.gz
TIA1-input	CN	20-20	0	TIA1_input.fastq.gz

Data Submission Information

ENCODE_alias	ENCODE_accession	object_type	assay_type	Sample_ID	SAMPLENAMEID	Selected	Status	Status_Date	Project	protocol_folder	protocol_file_name	ID
chris-burge:TIA1	ENCSR064NOY	experiment	RNA Bind-n-Seq	TIA1		Yes	Released	2022-07-12	ENCODE3			8135
chris-burge:TIA1-input-cntl	ENCSR930IPS	experiment	RNA Bind-n-Seq	TIA1		Yes	Released	2022-07-12	ENCODE3			8136
chris-burge:lib-TIA1-1	ENCLB841GLC	library	RNA Bind-n-Seq	TIA1		Yes	Released	2022-07-12	ENCODE3			8593
chris-burge:lib-TIA1-2	ENCLB750DPM	library	RNA Bind-n-Seq	TIA1		Yes	Released	2022-07-12	ENCODE3			8594
chris-burge:lib-TIA1-3	ENCLB239PTX	library	RNA Bind-n-Seq	TIA1		Yes	Released	2022-07-12	ENCODE3			8595
chris-burge:lib-TIA1-4	ENCLB637PUH	library	RNA Bind-n-Seq	TIA1		Yes	Released	2022-07-12	ENCODE3			8596
chris-burge:lib-TIA1-5	ENCLB840MOW	library	RNA Bind-n-Seq	TIA1		Yes	Released	2022-07-12	ENCODE3			8597
chris-burge:lib-TIA1-input-cntl	ENCLB873BDT	library	RNA Bind-n-Seq	TIA1		Yes	Released	2022-07-12	ENCODE3			8598
chris-burge:TIA1_1300.fastq.gz	ENCFF400JXE	file_fastq	RNA Bind-n-Seq	TIA1		Yes	Released	2022-07-14	ENCODE3			8987
chris-burge:TIA1_20.fastq.gz	ENCFF815CIK	file_fastq	RNA Bind-n-Seq	TIA1		Yes	Released	2022-07-14	ENCODE3			8988
chris-burge:TIA1_320.fastq.gz	ENCFF897ONM	file_fastq	RNA Bind-n-Seq	TIA1		Yes	Released	2022-07-14	ENCODE3			8989
chris-burge:TIA1_5.fastq.gz	ENCFF278GIB	file_fastq	RNA Bind-n-Seq	TIA1		Yes	Released	2022-07-14	ENCODE3			8990
chris-burge:TIA1_80.fastq.gz	ENCFF374UTI	file_fastq	RNA Bind-n-Seq	TIA1		Yes	Released	2022-07-14	ENCODE3			8991
chris-burge:TIA1_input.fastq.gz	ENCFF295WRQ	file_fastq	RNA Bind-n-Seq	TIA1		Yes	Released	2022-07-14	ENCODE3			8992
chris-burge:TIA1_enrichment_R.4mers.txt	ENCFF403RUI	file_enrichment	RNA Bind-n-Seq	TIA1		Yes	Released	2022-07-14	ENCODE3			9523
chris-burge:TIA1_enrichment_R.5mers.txt	ENCFF936GUV	file_enrichment	RNA Bind-n-Seq	TIA1		Yes	Released	2022-07-14	ENCODE3			9524
chris-burge:TIA1_enrichment_R.6mers.txt	ENCFF268DAL	file_enrichment	RNA Bind-n-Seq	TIA1		Yes	Released	2022-07-14	ENCODE3			9525
chris-burge:TIA1_enrichment_R.7mers.txt	ENCFF633HPI	file_enrichment	RNA Bind-n-Seq	TIA1		Yes	Released	2022-07-14	ENCODE3			9526
chris-burge:TIA1_est_binding_frac.4mers.txt	ENCFF042KLN	file_library-fraction	RNA Bind-n-Seq	TIA1		Yes	Released	2022-07-14	ENCODE3			9527
chris-burge:TIA1_est_binding_frac.5mers.txt	ENCFF217XXK	file_library-fraction	RNA Bind-n-Seq	TIA1		Yes	Released	2022-07-14	ENCODE3			9528
chris-burge:TIA1_est_binding_frac.6mers.txt	ENCFF540NRR	file_library-fraction	RNA Bind-n-Seq	TIA1		Yes	Released	2022-07-14	ENCODE3			9529
chris-burge:TIA1_est_binding_frac.7mers.txt	ENCFF424RKK	file_library-fraction	RNA Bind-n-Seq	TIA1		Yes	Released	2022-07-14	ENCODE3			9530
chris-burge:HepG2.with_motif.TIA1.bed.gz	ENCFF025PCM	file_bed	RNA Bind-n-Seq	TIA1		Yes	Released	2022-07-14	ENCODE3			9751
chris-burge:K562.with_motif.TIA1.bed.gz	ENCFF748GRE	file_bed	RNA Bind-n-Seq	TIA1		Yes	Released	2022-07-14	ENCODE3			9752

File Information

file_name	file_format	output_type	assay_type	lab	derived_from	controlled_by	Project	Note
TIA1.logo.png	png	document	RNA Bind-n-Seq	Burge Lab			ENCODE3
TIA1_1300.fastq.gz	fastq	reads	RNA Bind-n-Seq	Burge Lab		TIA1_input.fastq.gz	ENCODE3
TIA1_20.fastq.gz	fastq	reads	RNA Bind-n-Seq	Burge Lab		TIA1_input.fastq.gz	ENCODE3
TIA1_320.fastq.gz	fastq	reads	RNA Bind-n-Seq	Burge Lab		TIA1_input.fastq.gz	ENCODE3
TIA1_5.fastq.gz	fastq	reads	RNA Bind-n-Seq	Burge Lab		TIA1_input.fastq.gz	ENCODE3
TIA1_80.fastq.gz	fastq	reads	RNA Bind-n-Seq	Burge Lab		TIA1_input.fastq.gz	ENCODE3
TIA1_input.fastq.gz	fastq	reads	RNA Bind-n-Seq	Burge Lab			ENCODE3
TIA1_enrichment_R.4mers.txt	tsv	enrichment	RNA Bind-n-Seq	Burge Lab	TIA1_1300.fastq.gz,TIA1_20.fastq.gz,TIA1_320.fastq.gz,TIA1_5.fastq.gz,TIA1_80.fastq.gz,TIA1_input.fastq.gz		ENCODE3
TIA1_est_binding_frac.4mers.txt	tsv	enrichment	RNA Bind-n-Seq	Burge Lab	TIA1_1300.fastq.gz,TIA1_20.fastq.gz,TIA1_320.fastq.gz,TIA1_5.fastq.gz,TIA1_80.fastq.gz,TIA1_input.fastq.gz		ENCODE3
TIA1_enrichment_R.5mers.txt	tsv	enrichment	RNA Bind-n-Seq	Burge Lab	TIA1_1300.fastq.gz,TIA1_20.fastq.gz,TIA1_320.fastq.gz,TIA1_5.fastq.gz,TIA1_80.fastq.gz,TIA1_input.fastq.gz		ENCODE3
TIA1_est_binding_frac.5mers.txt	tsv	enrichment	RNA Bind-n-Seq	Burge Lab	TIA1_1300.fastq.gz,TIA1_20.fastq.gz,TIA1_320.fastq.gz,TIA1_5.fastq.gz,TIA1_80.fastq.gz,TIA1_input.fastq.gz		ENCODE3
TIA1_enrichment_R.6mers.txt	tsv	enrichment	RNA Bind-n-Seq	Burge Lab	TIA1_1300.fastq.gz,TIA1_20.fastq.gz,TIA1_320.fastq.gz,TIA1_5.fastq.gz,TIA1_80.fastq.gz,TIA1_input.fastq.gz		ENCODE3
TIA1_est_binding_frac.6mers.txt	tsv	enrichment	RNA Bind-n-Seq	Burge Lab	TIA1_1300.fastq.gz,TIA1_20.fastq.gz,TIA1_320.fastq.gz,TIA1_5.fastq.gz,TIA1_80.fastq.gz,TIA1_input.fastq.gz		ENCODE3
TIA1_enrichment_R.7mers.txt	tsv	enrichment	RNA Bind-n-Seq	Burge Lab	TIA1_1300.fastq.gz,TIA1_20.fastq.gz,TIA1_320.fastq.gz,TIA1_5.fastq.gz,TIA1_80.fastq.gz,TIA1_input.fastq.gz		ENCODE3
TIA1_est_binding_frac.7mers.txt	tsv	enrichment	RNA Bind-n-Seq	Burge Lab	TIA1_1300.fastq.gz,TIA1_20.fastq.gz,TIA1_320.fastq.gz,TIA1_5.fastq.gz,TIA1_80.fastq.gz,TIA1_input.fastq.gz		ENCODE3
K562.with_motif.TIA1.bed.gz	bed_RBNS	peaks	RNA Bind-n-Seq	Burge Lab	TIA1_enrichment_R.5mers.txt,285.01v02.IDR.out.0102merged.bed.blacklist_removed.bed.narrowPeak.encode.bed.gz		ENCODE3
HepG2.with_motif.TIA1.bed.gz	bed_RBNS	peaks	RNA Bind-n-Seq	Burge Lab	TIA1_enrichment_R.5mers.txt,215.01v02.IDR.out.0102merged.bed.blacklist_removed.bed.narrowPeak.encode.bed.gz		ENCODE3