ENCORE RBNS:TAF15

Experiment Information (Status: Released)


RBP	TAF15
gene_aliases
Status	Released
Status_date	2022-07-15
Project	ENCODE3
Note
ID	36

Motif Logo

Sample Information

Sample_Name	Sample_Type	Read_size_range	rbns_protein_concentration	FILE_ID
TAF15-mockPD	CN	20-20	0	TAF15_0.fastq.gz
TAF15-1300	RBNS	20-20	1300	TAF15_1300.fastq.gz
TAF15-20	RBNS	20-20	20	TAF15_20.fastq.gz
TAF15-320	RBNS	20-20	320	TAF15_320.fastq.gz
TAF15-5	RBNS	20-20	5	TAF15_5.fastq.gz
TAF15-80	RBNS	20-20	80	TAF15_80.fastq.gz
TAF15-input	CN	20-20	0	TAF15_input.fastq.gz

Data Submission Information

ENCODE_alias	ENCODE_accession	object_type	assay_type	Sample_ID	SAMPLENAMEID	Selected	Status	Status_Date	Project	ID
chris-burge:TAF15	ENCSR827QYL	experiment	RNA Bind-n-Seq	TAF15	NSUN4-BGHcLV16-37	Yes	Released	2022-07-12	ENCODE3	8131
chris-burge:TAF15-mockPD-cntl	ENCSR755VBZ	experiment	RNA Bind-n-Seq	TAF15	MECP2-BGHcLV16-34	Yes	Released	2022-07-12	ENCODE3	8132
chris-burge:lib-TAF15-1	ENCLB749BEP	library	RNA Bind-n-Seq	TAF15	ERO1L-BGHcLV16-44	Yes	Released	2022-07-12	ENCODE3	8581
chris-burge:lib-TAF15-2	ENCLB696MFN	library	RNA Bind-n-Seq	TAF15	NSUN4-BGHcLV16-38	Yes	Released	2022-07-12	ENCODE3	8582
chris-burge:lib-TAF15-3	ENCLB829VFI	library	RNA Bind-n-Seq	TAF15	PTGES3-BGHcLV16-45	Yes	Released	2022-07-12	ENCODE3	8583
chris-burge:lib-TAF15-4	ENCLB637MJO	library	RNA Bind-n-Seq	TAF15	ERO1L-BGHcLV16-43	Yes	Released	2022-07-12	ENCODE3	8584
chris-burge:lib-TAF15-5	ENCLB275LHV	library	RNA Bind-n-Seq	TAF15	NSUN4-BGHcLV16-37	Yes	Released	2022-07-12	ENCODE3	8585
chris-burge:lib-TAF15-mockPD-cntl	ENCLB721ELP	library	RNA Bind-n-Seq	TAF15	MECP2-BGHcLV16-34	Yes	Released	2022-07-12	ENCODE3	8586
chris-burge:TAF15_0.fastq.gz	ENCFF160CZF	file_fastq	RNA Bind-n-Seq	TAF15	MECP2-BGHcLV16-34	Yes	Released	2022-07-14	ENCODE3	8974
chris-burge:TAF15_1300.fastq.gz	ENCFF304HMY	file_fastq	RNA Bind-n-Seq	TAF15	NSUN4-BGHcLV16-37	Yes	Released	2022-07-14	ENCODE3	8975
chris-burge:TAF15_20.fastq.gz	ENCFF206DZS	file_fastq	RNA Bind-n-Seq	TAF15	NSUN4-BGHcLV16-38	Yes	Released	2022-07-14	ENCODE3	8976
chris-burge:TAF15_320.fastq.gz	ENCFF662TOD	file_fastq	RNA Bind-n-Seq	TAF15	ERO1L-BGHcLV16-43	Yes	Released	2022-07-14	ENCODE3	8977
chris-burge:TAF15_5.fastq.gz	ENCFF032XJW	file_fastq	RNA Bind-n-Seq	TAF15	ERO1L-BGHcLV16-44	Yes	Released	2022-07-14	ENCODE3	8978
chris-burge:TAF15_80.fastq.gz	ENCFF686CWM	file_fastq	RNA Bind-n-Seq	TAF15	PTGES3-BGHcLV16-45	Yes	Released	2022-07-14	ENCODE3	8979
chris-burge:TAF15_enrichment_R.4mers.txt	ENCFF632XWC	file_enrichment	RNA Bind-n-Seq	TAF15	NSUN4-BGHcLV16-37	Yes	Released	2022-07-14	ENCODE3	9509
chris-burge:TAF15_enrichment_R.5mers.txt	ENCFF194JNW	file_enrichment	RNA Bind-n-Seq	TAF15	NSUN4-BGHcLV16-37	Yes	Released	2022-07-14	ENCODE3	9510
chris-burge:TAF15_enrichment_R.6mers.txt	ENCFF796QEY	file_enrichment	RNA Bind-n-Seq	TAF15	NSUN4-BGHcLV16-37	Yes	Released	2022-07-14	ENCODE3	9511
chris-burge:TAF15_est_binding_frac.4mers.txt	ENCFF302LUJ	file_library-fraction	RNA Bind-n-Seq	TAF15	NSUN4-BGHcLV16-37	Yes	Released	2022-07-14	ENCODE3	9512
chris-burge:TAF15_est_binding_frac.5mers.txt	ENCFF737RQL	file_library-fraction	RNA Bind-n-Seq	TAF15	NSUN4-BGHcLV16-37	Yes	Released	2022-07-14	ENCODE3	9513
chris-burge:TAF15_est_binding_frac.6mers.txt	ENCFF429MTP	file_library-fraction	RNA Bind-n-Seq	TAF15	NSUN4-BGHcLV16-37	Yes	Released	2022-07-14	ENCODE3	9514
chris-burge:HepG2.with_motif.TAF15.bed.gz	ENCFF937RMQ	file_bed	RNA Bind-n-Seq	TAF15	NSUN4-BGHcLV16-37	Yes	Released	2022-07-14	ENCODE3	9748
chris-burge:K562.with_motif.TAF15.bed.gz	ENCFF093XSA	file_bed	RNA Bind-n-Seq	TAF15	NSUN4-BGHcLV16-37	Yes	Released	2022-07-14	ENCODE3	9749

File Information

file_name	file_format	output_type	assay_type	lab	derived_from	controlled_by	Project
TAF15.logo.png	png	document	RNA Bind-n-Seq	Burge Lab			ENCODE3
TAF15_0.fastq.gz	fastq	reads	RNA Bind-n-Seq	Burge Lab			ENCODE3
TAF15_1300.fastq.gz	fastq	reads	RNA Bind-n-Seq	Burge Lab		TAF15_0.fastq.gz,SRSF5_input.fastq.gz	ENCODE3
TAF15_20.fastq.gz	fastq	reads	RNA Bind-n-Seq	Burge Lab		TAF15_0.fastq.gz,SRSF5_input.fastq.gz	ENCODE3
TAF15_320.fastq.gz	fastq	reads	RNA Bind-n-Seq	Burge Lab		TAF15_0.fastq.gz,SRSF5_input.fastq.gz	ENCODE3
TAF15_5.fastq.gz	fastq	reads	RNA Bind-n-Seq	Burge Lab		TAF15_0.fastq.gz,SRSF5_input.fastq.gz	ENCODE3
TAF15_80.fastq.gz	fastq	reads	RNA Bind-n-Seq	Burge Lab		TAF15_0.fastq.gz,SRSF5_input.fastq.gz	ENCODE3
TAF15_input.fastq.gz	fastq	reads	RNA Bind-n-Seq	Burge Lab			ENCODE3
TAF15_enrichment_R.4mers.txt	tsv	enrichment	RNA Bind-n-Seq	Burge Lab	TAF15_0.fastq.gz,TAF15_1300.fastq.gz,TAF15_20.fastq.gz,TAF15_320.fastq.gz,TAF15_5.fastq.gz,TAF15_80.fastq.gz,SRSF5_input.fastq.gz		ENCODE3
TAF15_est_binding_frac.4mers.txt	tsv	enrichment	RNA Bind-n-Seq	Burge Lab	TAF15_0.fastq.gz,TAF15_1300.fastq.gz,TAF15_20.fastq.gz,TAF15_320.fastq.gz,TAF15_5.fastq.gz,TAF15_80.fastq.gz,SRSF5_input.fastq.gz		ENCODE3
TAF15_enrichment_R.5mers.txt	tsv	enrichment	RNA Bind-n-Seq	Burge Lab	TAF15_0.fastq.gz,TAF15_1300.fastq.gz,TAF15_20.fastq.gz,TAF15_320.fastq.gz,TAF15_5.fastq.gz,TAF15_80.fastq.gz,SRSF5_input.fastq.gz		ENCODE3
TAF15_est_binding_frac.5mers.txt	tsv	enrichment	RNA Bind-n-Seq	Burge Lab	TAF15_0.fastq.gz,TAF15_1300.fastq.gz,TAF15_20.fastq.gz,TAF15_320.fastq.gz,TAF15_5.fastq.gz,TAF15_80.fastq.gz,SRSF5_input.fastq.gz		ENCODE3
TAF15_enrichment_R.6mers.txt	tsv	enrichment	RNA Bind-n-Seq	Burge Lab	TAF15_0.fastq.gz,TAF15_1300.fastq.gz,TAF15_20.fastq.gz,TAF15_320.fastq.gz,TAF15_5.fastq.gz,TAF15_80.fastq.gz,SRSF5_input.fastq.gz		ENCODE3
TAF15_est_binding_frac.6mers.txt	tsv	enrichment	RNA Bind-n-Seq	Burge Lab	TAF15_0.fastq.gz,TAF15_1300.fastq.gz,TAF15_20.fastq.gz,TAF15_320.fastq.gz,TAF15_5.fastq.gz,TAF15_80.fastq.gz,SRSF5_input.fastq.gz		ENCODE3
K562.with_motif.TAF15.bed.gz	bed_RBNS	peaks	RNA Bind-n-Seq	Burge Lab	TAF15_enrichment_R.5mers.txt,339.01v02.IDR.out.0102merged.bed.blacklist_removed.bed.narrowPeak.encode.bed.gz		ENCODE3
HepG2.with_motif.TAF15.bed.gz	bed_RBNS	peaks	RNA Bind-n-Seq	Burge Lab	TAF15_enrichment_R.5mers.txt,388.01v02.IDR.out.0102merged.bed.blacklist_removed.bed.narrowPeak.encode.bed.gz		ENCODE3