ENCORE RBNS:SUCLG1

SUCLG1 RNA Bind-n-Seq

Experiment Information (Status: Released)


RBP	SUCLG1
gene_aliases
Status	Released
Status_date	2020-11-23
Project	ENCODE4
Note
ID	22

Motif Logo

Sample Information

Sample_Name	Sample_Type	Read_size_range	rbns_protein_concentration	FILE_ID
SUCLG1-1300	RBNS	20-20	1300	SUCLG1_1300.fastq.gz
SUCLG1-5	RBNS	20-20	5	SUCLG1_5.fastq.gz
SUCLG1-80	RBNS	20-20	80	SUCLG1_80.fastq.gz
SUCLG1-input	CN	20-20	0	SUCLG1_input.fastq.gz

Data Submission Information

ENCODE_alias	ENCODE_accession	object_type	assay_type	Sample_ID	SAMPLENAMEID	Selected	Status	Status_Date	Project	protocol_folder	protocol_file_name	ID
chris-burge:SUCLG1_TROVE2-input-cntl	ENCSR989YKV	experiment	RNA Bind-n-Seq	SUCLG1		Yes	Released	2020-11-23	ENCODE4			1909
chris-burge:SUCLG1	ENCSR474NYR	experiment	RNA Bind-n-Seq	SUCLG1	PARP1-BGHcLV14-49	Yes	Released	2020-11-23	ENCODE4			1910
chris-burge:lib-SUCLG1-1	ENCLB468LIS	library	RNA Bind-n-Seq	SUCLG1	PARP1-BGHcLV14-49	Yes	Released	2020-11-23	ENCODE4			1941
chris-burge:lib-SUCLG1-2	ENCLB615NLI	library	RNA Bind-n-Seq	SUCLG1	PARP1-BGHcLV14-50	Yes	Released	2020-11-23	ENCODE4			1942
chris-burge:lib-SUCLG1-3	ENCLB847FHI	library	RNA Bind-n-Seq	SUCLG1		Yes	Released	2020-11-23	ENCODE4			1943
chris-burge:lib-SUCLG1_TROVE2-input-cntl	ENCLB439GTO	library	RNA Bind-n-Seq	SUCLG1		Yes	Released	2020-11-23	ENCODE4			1944
chris-burge:SUCLG1_1300.fastq.gz	ENCFF764GUH	file_fastq	RNA Bind-n-Seq	SUCLG1	PARP1-BGHcLV14-49	Yes	Released	2020-11-23	ENCODE4			1977
chris-burge:SUCLG1_5.fastq.gz	ENCFF746FBG	file_fastq	RNA Bind-n-Seq	SUCLG1	PARP1-BGHcLV14-50	Yes	Released	2020-11-23	ENCODE4			1978
chris-burge:SUCLG1_80.fastq.gz	ENCFF516HHS	file_fastq	RNA Bind-n-Seq	SUCLG1		Yes	Released	2020-11-23	ENCODE4			1979
chris-burge:SUCLG1_input.fastq.gz	ENCFF733GGQ	file_fastq	RNA Bind-n-Seq	SUCLG1		Yes	Released	2020-11-23	ENCODE4			1980
chris-burge:SUCLG1_5mer_logo0.PWM	ENCFF862KWY	file_pwm	RNA Bind-n-Seq	SUCLG1	PARP1-BGHcLV14-49	Yes	Released	2020-11-23	ENCODE4			2021
chris-burge:SUCLG1_5mer_logo1.PWM	ENCFF250NYG	file_pwm	RNA Bind-n-Seq	SUCLG1	PARP1-BGHcLV14-49	Yes	Released	2020-11-23	ENCODE4			2022
chris-burge:SUCLG1_6mer_logo0.PWM	ENCFF882SPJ	file_pwm	RNA Bind-n-Seq	SUCLG1	PARP1-BGHcLV14-49	Yes	Released	2020-11-23	ENCODE4			2023
chris-burge:SUCLG1_6mer_logo1.PWM	ENCFF071ZPB	file_pwm	RNA Bind-n-Seq	SUCLG1	PARP1-BGHcLV14-49	Yes	Released	2020-11-23	ENCODE4			2024
chris-burge:SUCLG1_enrichment_R.4mers.mark_adapters.txt	ENCFF532AGU	file_enrichment	RNA Bind-n-Seq	SUCLG1	PARP1-BGHcLV14-49	Yes	Released	2020-11-23	ENCODE4			2062
chris-burge:SUCLG1_enrichment_R.5mers.mark_adapters.txt	ENCFF131HMZ	file_enrichment	RNA Bind-n-Seq	SUCLG1	PARP1-BGHcLV14-49	Yes	Released	2020-11-23	ENCODE4			2063
chris-burge:SUCLG1_enrichment_R.6mers.mark_adapters.txt	ENCFF779EOH	file_enrichment	RNA Bind-n-Seq	SUCLG1	PARP1-BGHcLV14-49	Yes	Released	2020-11-23	ENCODE4			2064

File Information

file_name	file_format	output_type	assay_type	lab	derived_from	controlled_by	Project	Note
SUCLG1_1300.fastq.gz	fastq	reads	RNA Bind-n-Seq	Burge Lab		SUCLG1_input.fastq.gz	ENCODE4
SUCLG1_5.fastq.gz	fastq	reads	RNA Bind-n-Seq	Burge Lab		SUCLG1_input.fastq.gz	ENCODE4
SUCLG1_80.fastq.gz	fastq	reads	RNA Bind-n-Seq	Burge Lab		SUCLG1_input.fastq.gz	ENCODE4
SUCLG1_input.fastq.gz	fastq	reads	RNA Bind-n-Seq	Burge Lab			ENCODE4
SUCLG1_5mer_logo0.PWM	tsv	enrichment	RNA Bind-n-Seq	Burge Lab	SUCLG1_1300.fastq.gz,SUCLG1_5.fastq.gz,SUCLG1_80.fastq.gz,SUCLG1_input.fastq.gz		ENCODE4
SUCLG1_5mer_logo1.PWM	tsv	enrichment	RNA Bind-n-Seq	Burge Lab	SUCLG1_1300.fastq.gz,SUCLG1_5.fastq.gz,SUCLG1_80.fastq.gz,SUCLG1_input.fastq.gz		ENCODE4
SUCLG1_6mer_logo0.PWM	tsv	enrichment	RNA Bind-n-Seq	Burge Lab	SUCLG1_1300.fastq.gz,SUCLG1_5.fastq.gz,SUCLG1_80.fastq.gz,SUCLG1_input.fastq.gz		ENCODE4
SUCLG1_6mer_logo1.PWM	tsv	enrichment	RNA Bind-n-Seq	Burge Lab	SUCLG1_1300.fastq.gz,SUCLG1_5.fastq.gz,SUCLG1_80.fastq.gz,SUCLG1_input.fastq.gz		ENCODE4
SUCLG1_enrichment_R.4mers.mark_adapters.txt	tsv	enrichment	RNA Bind-n-Seq	Burge Lab	SUCLG1_1300.fastq.gz,SUCLG1_5.fastq.gz,SUCLG1_80.fastq.gz,SUCLG1_input.fastq.gz		ENCODE4
SUCLG1_enrichment_R.5mers.mark_adapters.txt	tsv	enrichment	RNA Bind-n-Seq	Burge Lab	SUCLG1_1300.fastq.gz,SUCLG1_5.fastq.gz,SUCLG1_80.fastq.gz,SUCLG1_input.fastq.gz		ENCODE4
SUCLG1_enrichment_R.6mers.mark_adapters.txt	tsv	enrichment	RNA Bind-n-Seq	Burge Lab	SUCLG1_1300.fastq.gz,SUCLG1_5.fastq.gz,SUCLG1_80.fastq.gz,SUCLG1_input.fastq.gz		ENCODE4
SUCLG1_5mer_seqlogos.png	png	document	RNA Bind-n-Seq	Burge Lab			ENCODE4
SUCLG1_6mer_seqlogos.png	png	document	RNA Bind-n-Seq	Burge Lab			ENCODE4
SUCLG1_coomassie.pdf	pdf	document	RNA Bind-n-Seq	Burge Lab			ENCODE4